5AZG

Crystal structure of LGG-1 complexed with a UNC-51 peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.212 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural Basis of the Differential Function of the Two C. elegans Atg8 Homologs, LGG-1 and LGG-2, in Autophagy

Wu, F.Watanabe, Y.Guo, X.Y.Qi, X.Wang, P.Zhao, H.Y.Wang, Z.Fujioka, Y.Zhang, H.Ren, J.Q.Fang, T.C.Shen, Y.X.Feng, W.Hu, J.J.Noda, N.N.Zhang, H.

(2015) Mol.Cell 60: 914-929


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein lgg-1
A, B
119Caenorhabditis elegansMutation(s): 0 
Gene Names: lgg-1 (atg-8.1)
Find proteins for Q09490 (Caenorhabditis elegans)
Go to UniProtKB:  Q09490
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Serine/threonine-protein kinase unc-51
C, D
10Caenorhabditis elegansMutation(s): 0 
Gene Names: unc-51
EC: 2.7.11.1
Find proteins for Q23023 (Caenorhabditis elegans)
Go to UniProtKB:  Q23023
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CD
Query on CD

Download SDF File 
Download CCD File 
A, B
CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.81 Å
  • R-Value Free: 0.246 
  • R-Value Work: 0.212 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 63.684α = 90.00
b = 80.116β = 90.00
c = 111.500γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
HKL-2000data reduction
Cootmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology of JapanJapan25111004
Japan Science and Technology AgencyJapanCREST

Revision History 

  • Version 1.0: 2015-12-30
    Type: Initial release