Download MendeleyNatural ligand-nonmimetic inhibitors of the lipid-transfer protein CERT
Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Suzuki, M., Kobayashi, S., Hanada, K.(2019) Commun Chem
5ZYJ
Crystal structure of CERT START domain in complex with compound E16A
- PDB DOI: 10.2210/pdb5ZYJ/pdb
- Classification: LIPID TRANSPORT
- Organism(s): Homo sapiens
- Expression System: Paenibacillus sp. SVP_R3
- Mutation(s): No
- Deposited: 2018-05-25 Released: 2019-02-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.254
- R-Value Work: 0.200
- R-Value Observed: 0.203
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| LIPID-TRANSFER PROTEIN CERT | A | 237 | Homo sapiens | Mutation(s): 0 Gene Names: CERT, CERT1, COL4A3BP, STARD11 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y5P4 (Homo sapiens) Explore Q9Y5P4 Go to UniProtKB: Q9Y5P4 | |||||
PHAROS: Q9Y5P4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9Y5P4 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 9ML (Subject of Investigation/LOI) Query on 9ML | B [auth A] | 2-[4-[4-pentyl-3-[(1~{S},2~{R})-2-pyridin-2-ylcyclopropyl]phenyl]phenyl]sulfonylethanol C27 H31 N O3 S RINDEJMEOMKHPC-CLJLJLNGSA-N |  | Ligand Interaction | |
| GOL Query on GOL | C [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.254
- R-Value Work: 0.200
- R-Value Observed: 0.203
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 59.989 | α = 90 |
| b = 59.989 | β = 90 |
| c = 152.981 | γ = 90 |
| Software Name | Purpose |
|---|---|
| Aimless | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| CrysalisPro | data reduction |
| REFMAC | phasing |
Entry History
Deposition Data
- Released Date: 2019-02-27 Deposition Author(s): Suzuki, M., Nakao, N., Ueno, M., Sakai, S., Egawa, D., Hanzawa, H., Kawasaki, S., Kumagai, K., Kobayashi, S., Hanada, K.
Revision History (Full details and data files)
- Version 1.0: 2019-02-27
Type: Initial release - Version 1.1: 2019-03-06
Changes: Data collection, Database references
