5ZXE | pdb_00005zxe

Structure of a consensus sequence derived from the FGF family

• PDB DOI: https://doi.org/10.2210/pdb5ZXE/pdb

• Classification: CELL CYCLE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli K-12
• Mutation(s): No 


• Deposited: 2018-05-19 Released: 2019-07-24 
• Deposition Author(s): Tripathi, S.K., Mandalaparthy, V., Ramaswamy, S., Gosavi, S.
• Funding Organization(s): Other private

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free: 
  0.201 (Depositor), 0.180 (DCC) 
• R-Value Work: 
  0.171 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.172 (Depositor) 

Starting Model: experimental

Literature

Structure of a consensus sequence derived from the FGF family

Tripathi, S.K., Mandalaparthy, V., Gosavi, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 15.31 kDa 
• Atom Count: 1,284 
• Modeled Residue Count: 130 
• Deposited Residue Count: 130 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Consensus sequence based basic form of fibroblast growth factor	A	130	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	D [auth A]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
GOL	B [auth A], C [auth A]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
CL	F [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA	E [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.30 Å
• R-Value Free:  0.201 (Depositor), 0.180 (DCC) 
• R-Value Work:  0.171 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.172 (Depositor) 

Space Group: P 2 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.718	α = 90
b = 45.91	β = 90
c = 90.87	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-07-24 
Deposition Author(s): Tripathi, S.K., Mandalaparthy, V., Ramaswamy, S., Gosavi, S.

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Funding Organization	Location	Grant Number
Other private	India	EMR/2016/003885

Revision History  

• Version 1.0: 2019-07-24
  Type: Initial release
  
• Version 1.1: 2020-01-22
  Changes: Data collection
• Version 1.2: 2023-11-22
  Changes: Data collection, Database references, Refinement description