5ZW8

PigA with FAD and proline


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.689 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.154 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of PigA, a prolyl thioester-oxidizing enzyme in prodigiosin biosynthesis.

Lee, C.-C.Ko, T.-P.Chen, C.T.Chan, Y.T.Lo, S.Y.Chang, J.Y.Chen, Y.W.Chung, T.F.Hsieh, H.J.Hsiao, C.D.Wang, A.H.J.

(2018) Chembiochem --: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
L-prolyl-[peptidyl-carrier protein] dehydrogenase
A
402Serratia sp. (strain ATCC 39006)Mutation(s): 0 
Gene Names: pigA
EC: 1.3.8.14
Find proteins for Q5W271 (Serratia sp. (strain ATCC 39006))
Go to UniProtKB:  Q5W271
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
O4B
Query on O4B

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A
1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE
C12 H24 O6
XEZNGIUYQVAUSS-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
FAD
Query on FAD

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A
FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
 Ligand Interaction
MLA
Query on MLA

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Download CCD File 
A
MALONIC ACID
DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; METHANEDICARBOXYLIC ACID
C3 H4 O4
OFOBLEOULBTSOW-UHFFFAOYSA-N
 Ligand Interaction
PRO
Query on PRO

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Download CCD File 
A
PROLINE
C5 H9 N O2
ONIBWKKTOPOVIA-BYPYZUCNSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.689 Å
  • R-Value Free: 0.180 
  • R-Value Work: 0.154 
  • Space Group: I 2 2 2
Unit Cell:
Length (Å)Angle (°)
a = 85.585α = 90.00
b = 85.558β = 90.00
c = 146.144γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXphasing
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Taiwan--

Revision History 

  • Version 1.0: 2018-09-05
    Type: Initial release