5ZU0

Proteobacterial origin of protein arginine methylation and regulation of Complex I assembly by MidA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Proteobacterial Origin of Protein Arginine Methylation and Regulation of Complex I Assembly by MidA

Hameed, U.F.S.Sanislav, O.Lay, S.T.Annesley, S.J.Jobichen, C.Fisher, P.R.Swaminathan, K.Arold, S.T.

(2018) Cell Rep 24: 1996-2004


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Protein arginine methyltransferase NDUFAF7 homolog, mitochondrial
A, B, C
414Dictyostelium discoideumMutation(s): 0 
Gene Names: midA
EC: 2.1.1.320
Find proteins for Q54S83 (Dictyostelium discoideum)
Go to UniProtKB:  Q54S83
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SAH
Query on SAH

Download SDF File 
Download CCD File 
A, B, C
S-ADENOSYL-L-HOMOCYSTEINE
C14 H20 N6 O5 S
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.200 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 72.828α = 90.00
b = 105.163β = 90.00
c = 201.221γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
XSCALEdata scaling
XDSdata reduction
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education (Singapore)Singapore--

Revision History 

  • Version 1.0: 2018-08-22
    Type: Initial release
  • Version 1.1: 2018-08-29
    Type: Data collection, Database references