5ZS7

Acetylation of lysine 100 in Phosphoglycerate mutase 1

  • Classification: ISOMERASE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2018-04-28 Released: 2019-05-22 
  • Deposition Author(s): Jiang, L.L., Zhou, L.
  • Funding Organization(s): National Natural Science Foundation of China, Shanghai Municipal committee of Science and Technology, The program for Shanghai Rising Star

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.193 

wwPDB Validation 3D Report Full Report



Literature

Acetylation of lysine 100 in Phosphoglycerate mutase 1

Jiang, L.L.Zhou, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1B233Homo sapiensMutation(s): 0 
Gene Names: PGAM1PGAMACDABP0006
EC: 5.4.2.11 (PDB Primary Data), 5.4.2.4 (PDB Primary Data)
Find proteins for P18669 (Homo sapiens)
Explore P18669 
Go to UniProtKB:  P18669
NIH Common Fund Data Resources
PHAROS  P18669
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1C234Homo sapiensMutation(s): 0 
Gene Names: PGAM1PGAMACDABP0006
EC: 5.4.2.11 (PDB Primary Data), 5.4.2.4 (PDB Primary Data)
Find proteins for P18669 (Homo sapiens)
Explore P18669 
Go to UniProtKB:  P18669
NIH Common Fund Data Resources
PHAROS  P18669
Protein Feature View
 ( Mouse scroll to zoom / Hold left click to move )
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MES
Query on MES

Download CCD File 
C
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
ALY
Query on ALY
CL-PEPTIDE LINKINGC8 H16 N2 O3LYS
NEP
Query on NEP
CL-PEPTIDE LINKINGC6 H10 N3 O5 PHIS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.189 
  • R-Value Observed: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 78.833α = 90
b = 82.827β = 90
c = 100.232γ = 90
Software Package:
Software NamePurpose
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-04-28 
  • Released Date: 2019-05-22 
  • Deposition Author(s): Jiang, L.L., Zhou, L.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina21472026
National Natural Science Foundation of ChinaChina31571479
National Natural Science Foundation of ChinaChina81622038
National Natural Science Foundation of ChinaChina81772965
Shanghai Municipal committee of Science and TechnologyChina14XD1400300
The program for Shanghai Rising StarChina15QA1400300

Revision History 

  • Version 1.0: 2019-05-22
    Type: Initial release