5ZS7

Acetylation of lysine 100 in Phosphoglycerate mutase 1

  • Classification: ISOMERASE
  • Organism(s): Homo sapiens
  • Expression System: Escherichia coli

  • Deposited: 2018-04-28 Released: 2019-05-22 
  • Deposition Author(s): Jiang, L.L., Zhou, L.
  • Funding Organization(s): National Natural Science Foundation of China; Shanghai Municipal committee of Science and Technology; The program for Shanghai Rising Star 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.189 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Acetylation of lysine 100 in Phosphoglycerate mutase 1

Jiang, L.L.Zhou, L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1
B
233Homo sapiensMutation(s): 0 
Gene Names: PGAM1 (PGAMA)
EC: 5.4.2.11, 5.4.2.4
Find proteins for P18669 (Homo sapiens)
Go to Gene View: PGAM1
Go to UniProtKB:  P18669
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Phosphoglycerate mutase 1
C
234Homo sapiensMutation(s): 0 
Gene Names: PGAM1 (PGAMA)
EC: 5.4.2.11, 5.4.2.4
Find proteins for P18669 (Homo sapiens)
Go to Gene View: PGAM1
Go to UniProtKB:  P18669
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
C
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MES
Query on MES

Download SDF File 
Download CCD File 
C
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  2 Unique
IDChainsTypeFormula2D DiagramParent
NEP
Query on NEP
C
L-PEPTIDE LINKINGC6 H10 N3 O5 PHIS
ALY
Query on ALY
C
L-PEPTIDE LINKINGC8 H16 N2 O3LYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.68 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.189 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 78.833α = 90.00
b = 82.827β = 90.00
c = 100.232γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2018-04-28 
  • Released Date: 2019-05-22 
  • Deposition Author(s): Jiang, L.L., Zhou, L.

Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina21472026
National Natural Science Foundation of ChinaChina31571479
National Natural Science Foundation of ChinaChina81622038
National Natural Science Foundation of ChinaChina81772965
Shanghai Municipal committee of Science and TechnologyChina14XD1400300
The program for Shanghai Rising StarChina15QA1400300

Revision History 

  • Version 1.0: 2019-05-22
    Type: Initial release