Download MendeleyCrystal structure of a bacterial ProRS with ligands
Cheng, B., Luo, S., Luo, Z., Chen, Y., Yu, Y., Guo, J., Liu, Q., Zhou, H.To be published.
5ZNJ
Crystal structure of a bacterial ProRS with ligands
- PDB DOI: 10.2210/pdb5ZNJ/pdb
- Classification: LIGASE
- Organism(s): Staphylococcus aureus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2018-04-09 Released: 2019-05-29
- Funding Organization(s): National Natural Science Foundation of China
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.222
- R-Value Work: 0.197
- R-Value Observed: 0.199
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Proline--tRNA ligase | A | 567 | Staphylococcus aureus | Mutation(s): 0 Gene Names: proS, CT123_02285 EC: 6.1.1.15 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | B [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | Ligand Interaction | |
| HFG Query on HFG | C [auth A] | 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one C16 H17 Br Cl N3 O3 LVASCWIMLIKXLA-CABCVRRESA-N |  | Ligand Interaction | |
| PO4 Query on PO4 | E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | D [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.84 Å
- R-Value Free: 0.222
- R-Value Work: 0.197
- R-Value Observed: 0.199
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 130.139 | α = 90 |
| b = 77.535 | β = 99.36 |
| c = 74.226 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data reduction |
| SCALA | data scaling |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-04-09
- Released Date: 2019-05-29 Deposition Author(s): Cheng, B., Yu, Y., Zhou, H.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China | China | 81773636 |
Revision History (Full details and data files)
- Version 1.0: 2019-05-29
Type: Initial release
