5ZMP

The structure of a lysine deacylase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The structure of a lysine deacylase

Ge, F.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
lysine deacylase
A
307Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6)Mutation(s): 0 
Find proteins for B1XMP1 (Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6))
Go to UniProtKB:  B1XMP1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ZN
Query on ZN

Download SDF File 
Download CCD File 
A
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.215 
  • R-Value Work: 0.173 
  • Space Group: P 41
Unit Cell:
Length (Å)Angle (°)
a = 56.790α = 90.00
b = 56.790β = 90.00
c = 112.520γ = 90.00
Software Package:
Software NamePurpose
MOLREPphasing
REFMACrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2018-04-05 
  • Released Date: 2019-02-06 
  • Deposition Author(s): Ge, F.

Revision History 

  • Version 1.0: 2019-02-06
    Type: Initial release