5ZMB | pdb_00005zmb

A-ubiquitin like protein from the trypanosoma brucei


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 5ZMB

This is version 1.3 of the entry. See complete history

Literature

Solution structure of a ubiquitin-like protein from Trypanosoma brucei

Mi, J.Zhang, J.Liao, S.Tu, X.

(2018) Protein Sci 27: 1831-1836

  • DOI: https://doi.org/10.1002/pro.3492
  • Primary Citation Related Structures: 
    5ZMB

  • PubMed Abstract: 

    Ubiquitin-like proteins, similar to ubiquitin, can either exist freely or be covalently attached to other proteins via an enzymatic cascade. The ubiquitin-like proteins play roles in multiple biological processes including transcription, stress responses, DNA repair and so on. In this study, a novel ubiquitin-like protein (TbUbl11) was identified in Trypanosoma brucei. The solution structure of TbUbl11 was solved by NMR spectroscopy. TbUbl11 adopts a conserved β-grasp fold composed by a five-stranded β-sheet curling around a central α-helix, similar to other ubiquitin-like proteins. Meanwhile, some differences between TbUbl11 and other ubiquitin-like proteins were also identified. Additionally, we revealed that TbUbl11 is located in the whole cell body of procyclic-form T. brucei.


  • Organizational Affiliation
    • Hefei National Laboratory for Physical Science at Microscale and School of Life Science, University of Science and Technology of China, Hefei, Anhui, 230026, People's Republic of China.

Macromolecule Content 

  • Total Structure Weight: 9.14 kDa 
  • Atom Count: 639 
  • Modeled Residue Count: 81 
  • Deposited Residue Count: 81 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ubiquintin-like protein81Trypanosoma brucei brucei TREU927Mutation(s): 0 
Gene Names: Tb927.6.3140
UniProt
Find proteins for Q583M0 (Trypanosoma brucei brucei (strain 927/4 GUTat10.1))
Explore Q583M0 
Go to UniProtKB:  Q583M0
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ583M0
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 500 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-08-15
    Type: Initial release
  • Version 1.1: 2018-11-07
    Changes: Data collection, Database references
  • Version 1.2: 2023-06-14
    Changes: Data collection, Database references, Other
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references