5ZLH

Crystal structure of Mn-ProtoporphyrinIX-reconstituted P450BM3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.310 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Reconstitution of full-length P450BM3 with an artificial metal complex by utilising the transpeptidase Sortase A.

Omura, K.Aiba, Y.Onoda, H.Stanfield, J.K.Ariyasu, S.Sugimoto, H.Shiro, Y.Shoji, O.Watanabe, Y.

(2018) Chem. Commun. (Camb.) 54: 7892-7895

  • DOI: 10.1039/c8cc02760a
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Haem substitution is an effective approach to tweak the function of haemoproteins. Herein, we report a facile haem substitution method for self-sufficient cytochrome P450BM3 (CYP102A1) from Bacillus megaterium utilising the transpeptidase Sortase A f ...

    Haem substitution is an effective approach to tweak the function of haemoproteins. Herein, we report a facile haem substitution method for self-sufficient cytochrome P450BM3 (CYP102A1) from Bacillus megaterium utilising the transpeptidase Sortase A from Staphylococcus aureus. We successfully constructed Mn-substituted BM3 and investigated its catalytic activity.


    Organizational Affiliation

    Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-0802, Japan. shoji.osami@a.mbox.nagoya-u.ac.jp.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bifunctional cytochrome P450/NADPH--P450 reductase
A, B, C, D
455Bacillus megateriumMutation(s): 0 
Find proteins for A0A1Q8UP87 (Bacillus megaterium)
Go to UniProtKB:  A0A1Q8UP87
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MNH
Query on MNH

Download SDF File 
Download CCD File 
A, B, C, D
MANGANESE PROTOPORPHYRIN IX
C34 H32 Mn N4 O4
UIBYYPDLEONCGQ-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.4 Å
  • R-Value Free: 0.346 
  • R-Value Work: 0.310 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 104.760α = 90.00
b = 155.320β = 90.00
c = 208.980γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PDB_EXTRACTdata extraction
HKL-2000data scaling
HKL-2000data collection
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Science and TechnologyJapanJPMJCR15P3
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan17H03087

Revision History 

  • Version 1.0: 2018-08-15
    Type: Initial release