5ZI0 | pdb_00005zi0

Ketoreductase LbCR mutant - M8

PDB DOI: https://doi.org/10.2210/pdb5ZI0/pdb

Classification: OXIDOREDUCTASE
Organism(s): Levilactobacillus brevis ATCC 367
Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
Mutation(s): Yes

Deposited: 2018-03-14 Released: 2019-01-16
Deposition Author(s): Gong, X.M., Zheng, G.W., Xu, J.H.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.220 (Depositor), 0.219 (DCC)
R-Value Work:
0.168 (Depositor), 0.170 (DCC)
R-Value Observed:
0.171 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 5ZI0

This is version 1.1 of the entry. See complete history.

Literature

Development of an Engineered Ketoreductase with Simultaneously Improved Thermostability and Activity for Making a Bulky Atorvastatin Precursor

Gong, X.M., Zhen, Q., Li, F.L., Zeng, B.B., Zheng, G.W., Xu, J.H.

(2019) ACS Catal 9: 147-153

DOI: https://doi.org/10.1021/acscatal.8b03382

Macromolecule Content

Total Structure Weight: 118.27 kDa
Atom Count: 7,972
Modeled Residue Count: 992
Deposited Residue Count: 1,124
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-acyl carrier protein reductase	A, B, C, D	281	Levilactobacillus brevis ATCC 367	Mutation(s): 5 Gene Names: LVIS_0330
UniProt
Find proteins for Q03TH6 (Levilactobacillus brevis (strain ATCC 367 / BCRC 12310 / CIP 105137 / JCM 1170 / LMG 11437 / NCIMB 947 / NCTC 947)) Explore Q03TH6 Go to UniProtKB: Q03TH6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q03TH6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.220 (Depositor), 0.219 (DCC)
R-Value Work: 0.168 (Depositor), 0.170 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.929	α = 90
b = 118.194	β = 90
c = 248.051	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2019-01-16

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	21472045
National Natural Science Foundation of China	China	21536004

Revision History (Full details and data files)

Version 1.0: 2019-01-16
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.