5ZHH | pdb_00005zhh

Structure of Inositol monophosphatase from Anabaena (Nostoc) sp. PCC 7120

PDB DOI: https://doi.org/10.2210/pdb5ZHH/pdb

Classification: HYDROLASE
Organism(s): Nostoc sp. PCC 7120 = FACHB-418
Expression System: Escherichia coli K-12
Mutation(s): No

Deposited: 2018-03-13 Released: 2019-04-03
Deposition Author(s): Zhang, S.R., Wang, F.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free:
0.190 (Depositor), 0.170 (DCC)
R-Value Work:
0.170 (Depositor), 0.170 (DCC)
R-Value Observed:
0.171 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of Inositol monophosphatase from Anabaena (Nostoc) sp. PCC 7120

Zhang, S.R., Wang, F.K., Hu, Z., Zong, Q., Jiang, L.

To be published.

Macromolecule Content

Total Structure Weight: 116.86 kDa
Atom Count: 8,304
Modeled Residue Count: 985
Deposited Residue Count: 1,080
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inositol-1-monophosphatase	A, B, C, D	270	Nostoc sp. PCC 7120 = FACHB-418	Mutation(s): 0 Gene Names: all2917 EC: 3.1.3.25
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free: 0.190 (Depositor), 0.170 (DCC)
R-Value Work: 0.170 (Depositor), 0.170 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.319	α = 111.86
b = 71.568	β = 101.42
c = 85.121	γ = 99.11

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
PDB_EXTRACT	data extraction
PHENIX	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2019-04-03

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-04-03
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.