5Z8B | pdb_00005z8b

Truncated N-acetylglucosaminyl transferase KfiA from E. coli K5 strain apo form

PDB DOI: https://doi.org/10.2210/pdb5Z8B/pdb

Classification: TRANSFERASE
Organism(s): Escherichia coli
Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Mutation(s): No

Deposited: 2018-01-31 Released: 2019-02-06
Deposition Author(s): Hori, H., Kakuta, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.91 Å
R-Value Free:
0.265 (Depositor), 0.270 (DCC)
R-Value Work:
0.178 (Depositor), 0.190 (DCC)
R-Value Observed:
0.182 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crysta structure of N-acetylglucosaminyl transferase KfiA from E. coli K5 strain

Hori, H., Kakuta, Y.

To be published.

Macromolecule Content

Total Structure Weight: 55.55 kDa
Atom Count: 3,376
Modeled Residue Count: 413
Deposited Residue Count: 484
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
KfiA protein	A, B	242	Escherichia coli	Mutation(s): 0 Gene Names: KfiA, kfiA, A4T40_20310, A9X62_20115, APT94_25675, CCL28_04130, CT143_12180, CT144_09435, CUB98_02030, CUB99_17445... KfiA, kfiA, A4T40_20310, A9X62_20115, APT94_25675, CCL28_04130, CT143_12180, CT144_09435, CUB98_02030, CUB99_17445, SM09_03227
UniProt
Find proteins for Q47332 (Escherichia coli) Explore Q47332 Go to UniProtKB: Q47332
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q47332
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.91 Å
R-Value Free: 0.265 (Depositor), 0.270 (DCC)
R-Value Work: 0.178 (Depositor), 0.190 (DCC)
R-Value Observed: 0.182 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 38.409	α = 90
b = 70.862	β = 90
c = 147.41	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-02-06

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-02-06
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.