5Z7J

Crystal structure of a lactonase double mutant in complex with ligand l


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal Structure of a Mycoestrogen-Detoxifying Lactonase from Rhinocladiella mackenziei: Molecular Insight into ZHD Substrate Selectivity

Zheng, Y.Y.Liu, W.T.Chen, C.C.Hu, X.Y.Liu, W.D.Ko, T.P.Tang, X.K.Wei, H.L.Huang, J.W.Guo, R.T.

(2018) Acs Catalysis 8: 4294-4298


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Lactonase for protein
A, B, C, D, E, F, G, H
264Rhinocladiella mackenziei CBS 650.93Mutation(s): 2 
Find proteins for A0A0D2ILK1 (Rhinocladiella mackenziei CBS 650.93)
Go to UniProtKB:  A0A0D2ILK1
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
36J
Query on 36J

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H
(3S,7R,11E)-7,14,16-trihydroxy-3-methyl-3,4,5,6,7,8,9,10-octahydro-1H-2-benzoxacyclotetradecin-1-one
C18 H24 O5
FPQFYIAXQDXNOR-QDKLYSGJSA-N
 Ligand Interaction
PEG
Query on PEG

Download SDF File 
Download CCD File 
B
DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.166 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 75.335α = 90.73
b = 94.759β = 92.36
c = 100.449γ = 91.59
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31400678, 31470240, 31500642, 31570130, 31600058, and 31600638

Revision History 

  • Version 1.0: 2018-05-02
    Type: Initial release