5Z72

Crystal structure of CcpC regulatory domain in complex with citrate from Bacillus amyloliquefaciens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanistic insights from the crystal structures of a catabolite control protein C on citrate-responsive mechanism

Chen, J.Wang, L.Dong, Y.Ha, N.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CcpCA, B, C, D, E293Bacillus velezensis FZB42Mutation(s): 0 
Gene Names: ccpCRBAM_013910
UniProt
Find proteins for A7Z428 (Bacillus velezensis (strain DSM 23117 / BGSC 10A6 / FZB42))
Explore A7Z428 
Go to UniProtKB:  A7Z428
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FLC
Query on FLC

Download Ideal Coordinates CCD File 
H [auth A], L [auth B], O [auth C], T [auth D], V [auth E]CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
 Ligand Interaction
NA
Query on NA

Download Ideal Coordinates CCD File 
F [auth A] , G [auth A] , I [auth B] , J [auth B] , K [auth B] , M [auth C] , N [auth C] , P [auth D] , 
F [auth A],  G [auth A],  I [auth B],  J [auth B],  K [auth B],  M [auth C],  N [auth C],  P [auth D],  Q [auth D],  R [auth D],  S [auth D],  U [auth E]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.185 
  • R-Value Observed: 0.188 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 140.963α = 90
b = 90.898β = 106.18
c = 105.531γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing
PHENIXmodel building

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChinaGrant No. 31200556
National Natural Science Foundation of ChinaChina21272031
Program for Liaoning Excellent Talents in UniversityChinaLJQ2015030

Revision History  (Full details and data files)

  • Version 1.0: 2018-02-28
    Type: Initial release