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Download EndnoteCrystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
Sugiura, H., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.To be published.
5Z6B
Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
- DOI: 10.2210/pdb5Z6B/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Bacillus subtilis (strain 168)
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2018-01-22 Released: 2019-01-23
- Funding Organization(s): Fuji Foundation for Protein Research
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.582 Å
- R-Value Free: 0.204
- R-Value Work: 0.179
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative ABC transporter substrate-binding protein YesO | A | 427 | Bacillus subtilis (strain 168) | Mutation(s): 0 Gene Names: yesO |
Find proteins for O31518 (Bacillus subtilis (strain 168)) Go to UniProtKB: O31518 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| RAM Query on RAM | A | ALPHA-L-RHAMNOSE C6 H12 O5 SHZGCJCMOBCMKK-HGVZOGFYSA-N |  | Ligand Interaction | |
| GAD Query on GAD | A | 2,6-ANHYDRO-3-DEOXY-D-ERYTHRO-HEX-2-ENONIC ACID C6 H8 O5 GQECVRZDTXJRPX-IMJSIDKUSA-N |  | Ligand Interaction | |
| GAL Query on GAL | A | BETA-D-GALACTOSE C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.582 Å
- R-Value Free: 0.204
- R-Value Work: 0.179
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 42.230 | α = 90.00 |
| b = 78.592 | β = 102.04 |
| c = 54.075 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data reduction |
| PHENIX | refinement |
| MOLREP | phasing |
| HKL-2000 | data scaling |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2018-01-22
- Released Date: 2019-01-23
- Deposition Author(s): Sugiura, H., Oiki, S., Mikami, B., Murata, K., Hashimoto, W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Fuji Foundation for Protein Research | Japan | -- |
