5Z3W

Malate dehydrogenase binds silver at C113


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure of silver-bound malate dehydrogenase

Wang, H.Wang, M.Sun, H.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Malate dehydrogenase
A, B, C, D
311Escherichia coli (strain K12)Mutation(s): 1 
Gene Names: mdh
EC: 1.1.1.37
Find proteins for P61889 (Escherichia coli (strain K12))
Go to UniProtKB:  P61889
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
AG
Query on AG

Download SDF File 
Download CCD File 
A, B, C, D
SILVER ION
Ag
FOIXSVOLVBLSDH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.29 Å
  • R-Value Free: 0.229 
  • R-Value Work: 0.196 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 57.648α = 90.00
b = 124.564β = 107.10
c = 85.503γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
PHENIXrefinement
XDSdata reduction
PHASERphasing
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
University Grants CommitteeHong Kong704612P
University Grants CommitteeHong Kong17305415P
University Grants CommitteeHong Kong703913P
University Grants CommitteeHong Kong1733616P
National Science Foundation (China)China21671203

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release