5Z2T

Crystal structure of DNA-bound DUX4-HD2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.623 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.276 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural basis of DUX4/IGH-driven transactivation.

Dong, X.Zhang, W.Wu, H.Huang, J.Zhang, M.Wang, P.Zhang, H.Chen, Z.Chen, S.J.Meng, G.

(2018) Leukemia 32: 1466-1476


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Double homeobox protein 4
C, D
64Homo sapiensMutation(s): 0 
Gene Names: DUX4 (DUX10)
Find proteins for Q9UBX2 (Homo sapiens)
Go to Gene View: DUX4
Go to UniProtKB:  Q9UBX2
Entity ID: 2
MoleculeChainsLengthOrganism
5'-D(*TP*TP*CP*TP*AP*AP*TP*CP*TP*AP*AP*TP*CP*TP*T)-3'E15synthetic construct
Entity ID: 3
MoleculeChainsLengthOrganism
5'-D(P*AP*AP*GP*AP*TP*TP*AP*GP*AP*TP*TP*AP*GP*T)-3'F14synthetic construct
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.623 Å
  • R-Value Free: 0.299 
  • R-Value Work: 0.276 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 51.610α = 90.00
b = 51.610β = 90.00
c = 166.550γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
PHASERphasing
PHENIXrefinement
MOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina81770142
National Natural Science Foundation of ChinaChina81370620
National Natural Science Foundation of ChinaChina81570120

Revision History 

  • Version 1.0: 2018-04-04
    Type: Initial release
  • Version 1.1: 2018-06-20
    Type: Data collection, Database references