5Z0V

Structural insight into the Zika virus capsid encapsulating the viral genome


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.913 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.204 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insight into the Zika virus capsid encapsulating the viral genome.

Li, T.Zhao, Q.Yang, X.Chen, C.Yang, K.Wu, C.Zhang, T.Duan, Y.Xue, X.Mi, K.Ji, X.Wang, Z.Yang, H.

(2018) Cell Res. 28: 497-499


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Extracellular solute-binding protein family 1,viral genome protein
A, B, C, D
445Zika virusEscherichia coli (strain K12)
This entity is chimeric
Mutation(s): 1 
Gene Names: malE
Find proteins for Q32ZE1 (Zika virus)
Go to UniProtKB:  Q32ZE1
Find proteins for P0AEX9 (Escherichia coli (strain K12))
Go to UniProtKB:  P0AEX9
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MAL
Query on MAL

Download SDF File 
Download CCD File 
A, B, C, D
MALTOSE
C12 H22 O11
GUBGYTABKSRVRQ-ASMJPISFSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.913 Å
  • R-Value Free: 0.248 
  • R-Value Work: 0.204 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 63.104α = 90.00
b = 223.076β = 109.99
c = 85.165γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data reduction
PHENIXrefinement
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
the National Key Basic Research Program of ChinaChina2015CB859800
the National Natural Science Foundation of ChinaChina31528006
the National Key Research Program of ChinaChina2016YFD0500300

Revision History 

  • Version 1.0: 2018-04-11
    Type: Initial release
  • Version 1.1: 2018-05-02
    Type: Data collection, Database references