5YZY

AtVAL1 B3 domain in complex with 13bp-DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of AtVAL1 B3 domain

Wu, B.X.Zhang, M.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
B3 domain-containing transcription repressor VAL1
C
128Arabidopsis thalianaGene Names: VAL1 (HSI2)
Find proteins for Q8W4L5 (Arabidopsis thaliana)
Go to UniProtKB:  Q8W4L5
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*TP*TP*CP*TP*GP*CP*AP*TP*GP*GP*AP*T)-3')A13synthetic construct
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(*TP*AP*TP*CP*CP*AP*TP*GP*CP*AP*GP*AP*A)-3')B13synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
HG
Query on HG

Download SDF File 
Download CCD File 
C
MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.61 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.210 
  • Space Group: I 41 2 2
Unit Cell:
Length (Å)Angle (°)
a = 87.780α = 90.00
b = 87.780β = 90.00
c = 148.735γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
SHELXDEphasing
HKL-3000data scaling
HKL-3000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2017-12-17 
  • Released Date: 2018-05-02 
  • Deposition Author(s): Wu, B.X., Zhang, M.M.

Revision History 

  • Version 1.0: 2018-05-02
    Type: Initial release