5YZU | pdb_00005yzu

Crystal structure of KAS III from Acinetobacter baumannii

PDB DOI: https://doi.org/10.2210/pdb5YZU/pdb

Classification: TRANSFERASE
Organism(s): Acinetobacter baumannii
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2017-12-15 Released: 2018-12-19
Deposition Author(s): Lee, W.C., Jung, M., Lee, J., Kim, Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free:
0.255 (Depositor), 0.260 (DCC)
R-Value Work:
0.198 (Depositor), 0.200 (DCC)
R-Value Observed:
0.201 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a novel KAS III from Acinetobacter baumannii

Lee, W.C., Jung, M., Lee, J., Kim, Y.

To be published.

Macromolecule Content

Total Structure Weight: 80.99 kDa
Atom Count: 5,845
Modeled Residue Count: 734
Deposited Residue Count: 736
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-Oxoacyl-[acyl-carrier-(ACP)] synthase III C terminal family protein	A, B	368	Acinetobacter baumannii	Mutation(s): 0 EC: 2.3.1.180 (PDB Primary Data), 2.3.1.41 (PDB Primary Data)
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.12 Å
R-Value Free: 0.255 (Depositor), 0.260 (DCC)
R-Value Work: 0.198 (Depositor), 0.200 (DCC)
R-Value Observed: 0.201 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 120.004	α = 90
b = 88.395	β = 116.48
c = 77.613	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2018-12-19

Deposition Author(s):

Funding Organization	Location	Grant Number
	Korea, Republic Of	--

Revision History (Full details and data files)

Version 1.0: 2018-12-19
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.