5YXT | pdb_00005yxt

Crystal structure of reducing end xylose-releasing exo-oligoxylanase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 
    0.289 (Depositor), 0.290 (DCC) 
  • R-Value Work: 
    0.244 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 
    0.245 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structure of glycoside hydrolase family 8 xylanase at 1.88 Angstroms resolution

Jiang, Z.Q.You, X.Huang, P.Ma, J.W.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Reducing end xylose-releasing exo-oligoxylanase
A, B, C, D
382Paenibacillus barengoltzii G22Mutation(s): 0 
Gene Names: C812_03928
UniProt
Find proteins for R9L536 (Paenibacillus barengoltzii G22)
Explore R9L536 
Go to UniProtKB:  R9L536
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupR9L536
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free:  0.289 (Depositor), 0.290 (DCC) 
  • R-Value Work:  0.244 (Depositor), 0.240 (DCC) 
  • R-Value Observed: 0.245 (Depositor) 
Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.57α = 100.34
b = 78.99β = 95.86
c = 89.148γ = 106.35
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2018-12-12
    Type: Initial release
  • Version 1.1: 2022-11-16
    Changes: Database references, Refinement description, Structure summary
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-10-16
    Changes: Structure summary