5YWI

Crystal structure of Arabidopsis thaliana HPPD Truncated mutant complexed with NTBC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.254 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of Arabidopsis thaliana HPPD Truncated mutant complexed with NTBC

Yang, W.C.Chen, J.N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
4-hydroxyphenylpyruvate dioxygenase
A
414Arabidopsis thalianaMutation(s): 0 
Gene Names: HPD (PDS1)
EC: 1.13.11.27
Find proteins for P93836 (Arabidopsis thaliana)
Go to Gene View: HPD
Go to UniProtKB:  P93836
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NTD
Query on NTD

Download SDF File 
Download CCD File 
A
2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE
C14 H10 F3 N O5
PMHVFNYNPNKNRO-UHFFFAOYSA-N
 Ligand Interaction
CO
Query on CO

Download SDF File 
Download CCD File 
A
COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.58 Å
  • R-Value Free: 0.287 
  • R-Value Work: 0.254 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 77.601α = 90.00
b = 83.568β = 102.22
c = 64.150γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
HKL-2000data reduction
PHENIXrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2017-11-29 
  • Released Date: 2019-01-16 
  • Deposition Author(s): Yang, W.C., Chen, J.N.

Funding OrganizationLocationGrant Number
National Science Foundation (China)China21672079
National Science Foundation (China)China21332004

Revision History 

  • Version 1.0: 2019-01-16
    Type: Initial release