5YVW

Crystal structure of full length NS3 protein (eD4NS2BNS3) from DENV4 in closed conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.207 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structures of unlinked full length NS3 from Dengue virus provide insights into dynamics of protease domain

Phoo, W.W.El Sahili, A.Zhang, Z.Z.Chen, M.W.Lescar, J.Vasudevan, S.Luo, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
B
599Dengue virus 4Mutation(s): 1 
Find proteins for F8TEL4 (Dengue virus 4)
Go to UniProtKB:  F8TEL4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A
47Dengue virus 4Mutation(s): 0 
Find proteins for F8TEL4 (Dengue virus 4)
Go to UniProtKB:  F8TEL4
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EPE
Query on EPE

Download SDF File 
Download CCD File 
B
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.207 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 52.770α = 90.00
b = 88.300β = 92.34
c = 81.110γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NTUSingaporeSTART UP GRANT
NMRCSingaporeCBRG14MAY051
NMRCSingaporeCBRG/0103/2016
NRFSingaporeCRP001-063

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release