5YVU

Crystal structures of unlinked full length NS3 from Dengue virus provide insights into dynamics of protease domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.491 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.222 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structures of unlinked full length NS3 from Dengue virus provide insights into dynamics of protease domain

Phoo, W.W.El Sahili, A.ZHANG, Z.Z.CHEN, M.W.VASUDEVAN, S.LESCAR, J.LUO, D.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
B
627Dengue virus 4Mutation(s): 1 
Find proteins for F8TEL4 (Dengue virus 4)
Go to UniProtKB:  F8TEL4
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Genome polyprotein
A
55Dengue virus 4Mutation(s): 0 
Find proteins for F8TEL4 (Dengue virus 4)
Go to UniProtKB:  F8TEL4
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Pancreatic trypsin inhibitor
I
55Bos taurusMutation(s): 0 
Find proteins for P00974 (Bos taurus)
Go to UniProtKB:  P00974
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.491 Å
  • R-Value Free: 0.266 
  • R-Value Work: 0.222 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 53.059α = 90.00
b = 85.627β = 97.95
c = 85.508γ = 90.00
Software Package:
Software NamePurpose
iMOSFLMdata reduction
Aimlessdata scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NTUSingaporeSTARTUP_GRANT
NMRCSingaporeCBRG14051
NMRCSingaporeCBRG/0103/2016
NRFSingaporeNRF-CRP001-063

Revision History 

  • Version 1.0: 2018-11-28
    Type: Initial release