5YTP | pdb_00005ytp

Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8

PDB DOI: https://doi.org/10.2210/pdb5YTP/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2017-11-19 Released: 2018-11-21
Deposition Author(s): Takao, K., Inoue, M., Fukui, K., Yano, T., Masui, R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.46 Å
R-Value Free:
0.271 (Depositor), 0.270 (DCC)
R-Value Work:
0.257 (Depositor), 0.260 (DCC)
R-Value Observed:
0.258 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of TTHA0139 L34A from Thermus thermophilus HB8

Takao, K., Inoue, M., Fukui, K., Yano, T., Masui, R.

To be published.

Macromolecule Content

Total Structure Weight: 17.32 kDa
Atom Count: 1,034
Modeled Residue Count: 134
Deposited Residue Count: 154
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TTHA0139	A, B	77	Thermus thermophilus HB8	Mutation(s): 1 Gene Names: TTHA0139
UniProt
Find proteins for Q5SM04 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SM04 Go to UniProtKB: Q5SM04
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5SM04
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.46 Å
R-Value Free: 0.271 (Depositor), 0.270 (DCC)
R-Value Work: 0.257 (Depositor), 0.260 (DCC)
R-Value Observed: 0.258 (Depositor)

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 65.531	α = 90
b = 65.531	β = 90
c = 74.242	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-11-21

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-11-21
Type: Initial release
Version 1.1: 2023-11-22
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.