5YSS

Crystal structure of aminocaproic acid cyclase in complex with NAD (+)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.276 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.197 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A synthetic microbial biosensor for high-throughput screening of lactam biocatalysts

Yeom, S.J.Kim, M.Kwon, K.K.Fu, Y.Rha, E.Park, S.H.Lee, H.Kim, H.Lee, D.H.Kim, D.M.Lee, S.G.

(2018) Nat Commun 9: 5053-5053


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
3-hydroxybutyrate dehydrogenase
A, B, C, D
256Citrobacter freundiiMutation(s): 0 
Gene Names: bdhA_1
EC: 1.1.1.30
Find proteins for A0A0D7LY80 (Citrobacter freundii)
Go to UniProtKB:  A0A0D7LY80
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NAD
Query on NAD

Download SDF File 
Download CCD File 
B, D
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.276 Å
  • R-Value Free: 0.271 
  • R-Value Work: 0.197 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 62.470α = 90.00
b = 148.259β = 101.47
c = 62.382γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data scaling
PHASERphasing
PHENIXrefinement
Cootmodel building
HKL-2000data collection
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Research Foundation (Korea)Korea, Republic Of2018R1A2B3004755

Revision History 

  • Version 1.0: 2018-10-31
    Type: Initial release
  • Version 1.1: 2018-12-12
    Type: Data collection, Database references