5YR1

Crystal Structure of Cypovirus Polyhedra R13A/E73C/Y83C/S193C/A194C Mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.156 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Supramolecular protein cages constructed from a crystalline protein matrix

Negishi, H.Abe, S.Yamashita, K.Hirata, K.Niwase, K.Boudes, M.Coulibaly, F.Mori, H.Ueno, T.

(2018) Chem. Commun. (Camb.) 54: 1988-1991

  • DOI: 10.1039/c7cc08689j
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • Protein crystals are formed via ordered arrangements of proteins, which assemble to form supramolecular structures. Here, we show a method for the assembly of supramolecular protein cages within a crystalline environment. The cages are stabilized by ...

    Protein crystals are formed via ordered arrangements of proteins, which assemble to form supramolecular structures. Here, we show a method for the assembly of supramolecular protein cages within a crystalline environment. The cages are stabilized by covalent cross-linking allowing their release via dissolution of the crystal. The high stability of the desiccated protein crystals allows cages to be constructed.


    Organizational Affiliation

    School of Life Science and Technology, Tokyo Institute of Technology, Nagatsuta-cho, Midori-ku, Yokohama 226-8501, Japan. saabe@bio.titech.ac.jp tueno@bio.titech.ac.jp.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Polyhedrin
A
248Bombyx mori cytoplasmic polyhedrosis virusMutation(s): 5 
Find proteins for P11041 (Bombyx mori cytoplasmic polyhedrosis virus)
Go to UniProtKB:  P11041
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.209 
  • R-Value Work: 0.156 
  • Space Group: I 2 3
Unit Cell:
Length (Å)Angle (°)
a = 103.590α = 90.00
b = 103.590β = 90.00
c = 103.590γ = 90.00
Software Package:
Software NamePurpose
PHENIXphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
JSPSJapan26620130
JSPSJapan15J11955

Revision History 

  • Version 1.0: 2018-02-21
    Type: Initial release
  • Version 1.1: 2018-03-07
    Type: Database references