5YPQ | pdb_00005ypq

Crystal structure of sulfated dehydroquinate dehydratase from Acinetobacter baumannii at 2.65 A resolution

PDB DOI: https://doi.org/10.2210/pdb5YPQ/pdb

Classification: LYASE
Organism(s): Acinetobacter baumannii ATCC 17978
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-11-02 Released: 2017-11-22
Deposition Author(s): Iqbal, N., Kaur, P., Sharma, S., Singh, T.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.65 Å
R-Value Free:
0.252 (Depositor), 0.250 (DCC)
R-Value Work:
0.183 (Depositor), 0.190 (DCC)
R-Value Observed:
0.186 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of sulfated dehydroquinate dehydratase from Acinetobacter baumannii at 2.65 A resolution

Iqbal, N., Kaur, P., Sharma, S., Singh, T.

To be published.

Macromolecule Content

Total Structure Weight: 199.72 kDa
Atom Count: 13,864
Modeled Residue Count: 1,742
Deposited Residue Count: 1,812
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-dehydroquinate dehydratase	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	151	Acinetobacter baumannii ATCC 17978	Mutation(s): 0 Gene Names: aroQ, A1S_2009 EC: 4.2.1.10
UniProt
Find proteins for A3M692 (Acinetobacter baumannii (strain ATCC 17978 / DSM 105126 / CIP 53.77 / LMG 1025 / NCDC KC755 / 5377)) Explore A3M692 Go to UniProtKB: A3M692
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A3M692
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain Z [auth K] SDF format, chain Y [auth J] SDF format, chain X [auth I] SDF format, chain V [auth H] SDF format, chain U [auth G] SDF format, chain S [auth F] SDF format, chain R [auth E] SDF format, chain Q [auth D] SDF format, chain P [auth C] SDF format, chain N [auth B] SDF format, chain M [auth A] SDF format, chain BA [auth L] MOL2 format, chain Z [auth K] MOL2 format, chain Y [auth J] MOL2 format, chain X [auth I] MOL2 format, chain V [auth H] MOL2 format, chain U [auth G] MOL2 format, chain S [auth F] MOL2 format, chain R [auth E] MOL2 format, chain Q [auth D] MOL2 format, chain P [auth C] MOL2 format, chain N [auth B] MOL2 format, chain M [auth A] MOL2 format, chain BA [auth L] mmCIF format, chain Z [auth K] mmCIF format, chain Y [auth J] mmCIF format, chain X [auth I] mmCIF format, chain V [auth H] mmCIF format, chain U [auth G] mmCIF format, chain S [auth F] mmCIF format, chain R [auth E] mmCIF format, chain Q [auth D] mmCIF format, chain P [auth C] mmCIF format, chain N [auth B] mmCIF format, chain M [auth A] mmCIF format, chain BA [auth L]	BA [auth L] M [auth A] N [auth B] P [auth C] Q [auth D] BA [auth L], M [auth A], N [auth B], P [auth C], Q [auth D], R [auth E], S [auth F], U [auth G], V [auth H], X [auth I], Y [auth J], Z [auth K]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain BA [auth L] Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain X [auth I] Focus chain Y [auth J] Focus chain Z [auth K] Interactions & Density Focus chain BA [auth L] Focus chain M [auth A] Focus chain N [auth B] Focus chain P [auth C] Focus chain Q [auth D] Focus chain R [auth E] Focus chain S [auth F] Focus chain U [auth G] Focus chain V [auth H] Focus chain X [auth I] Focus chain Y [auth J] Focus chain Z [auth K]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain W [auth H] SDF format, chain T [auth F] SDF format, chain O [auth B] SDF format, chain AA [auth K] MOL2 format, chain W [auth H] MOL2 format, chain T [auth F] MOL2 format, chain O [auth B] MOL2 format, chain AA [auth K] mmCIF format, chain W [auth H] mmCIF format, chain T [auth F] mmCIF format, chain O [auth B] mmCIF format, chain AA [auth K]	AA [auth K], O [auth B], T [auth F], W [auth H]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth K] Focus chain O [auth B] Focus chain T [auth F] Focus chain W [auth H] Interactions & Density Focus chain AA [auth K] Focus chain O [auth B] Focus chain T [auth F] Focus chain W [auth H]