5YNW

Crystal structure of an aromatic prenyltransferase FAMD1 from Fischerella ambigua UTEX 1903 in complex with DMASPP and INN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.151 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Structural insight into a novel indole prenyltransferase in hapalindole-type alkaloid biosynthesis.

Wang, J.Chen, C.C.Yang, Y.Liu, W.Ko, T.P.Shang, N.Hu, X.Xie, Y.Huang, J.W.Zhang, Y.Guo, R.T.

(2018) Biochem. Biophys. Res. Commun. 495: 1782-1788


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
aromatic prenyltransferase
A, B
329Fischerella ambigua UTEX 1903Mutation(s): 0 
Gene Names: ambP3
Find proteins for V5TDY7 (Fischerella ambigua UTEX 1903)
Go to UniProtKB:  V5TDY7
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8XL
Query on 8XL

Download SDF File 
Download CCD File 
B
3-[(Z)-2-isocyanoethenyl]-1H-indole
C11 H8 N2
JQMYMZZLIOIXEO-SREVYHEPSA-N
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
DST
Query on DST

Download SDF File 
Download CCD File 
A, B
DIMETHYLALLYL S-THIOLODIPHOSPHATE
C5 H14 O6 P2 S
UWSFTDFHOGCIEL-UHFFFAOYSA-N
 Ligand Interaction
IMD
Query on IMD

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Download CCD File 
B
IMIDAZOLE
C3 H5 N2
RAXXELZNTBOGNW-UHFFFAOYSA-O
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.194 
  • R-Value Work: 0.151 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 93.583α = 90.00
b = 211.607β = 90.00
c = 82.421γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
HKL-2000data reduction
HKL-2000data scaling
SOLVEphasing
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release
  • Version 1.1: 2019-02-06
    Type: Data collection, Structure summary