5YNB

Crystal structure of MERS-CoV nsp16/nsp10 complex bound to Sinefungin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 

wwPDB Validation 3D Report Full Report



Literature

Structural insights into the molecular mechanism of MERS Coronavirus RNA ribose 2'-O-methylation by nsp16/nsp10 protein complex

Wei, S.M.Yang, L.Ke, Z.H.Liu, Q.Y.Chen, Y.Yang, Z.Z.Guo, D.Y.Fan, C.P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
nsp16 protein
A
303Human betacoronavirus 2c EMC/2012Mutation(s): 0 
Gene Names: orf1ab
Find proteins for K0BWD0 (Human betacoronavirus 2c EMC/2012)
Go to UniProtKB:  K0BWD0
Protein Feature View
  • Reference Sequence

Find similar proteins by: Sequence  |  Structure

Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
nsp10 protein
B
140Human betacoronavirus 2c EMC/2012Mutation(s): 0 
Gene Names: orf1ab
Find proteins for K4LC41 (Human betacoronavirus 2c EMC/2012)
Go to UniProtKB:  K4LC41
Protein Feature View
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SFG
Query on SFG

Download CCD File 
A
SINEFUNGIN
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
 Ligand Interaction
ZN
Query on ZN

Download CCD File 
B
ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.187 
  • R-Value Observed: 0.189 
  • Space Group: P 21 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 66.325α = 90
b = 70.206β = 90
c = 119.198γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
NSFCChina31570762

Revision History 

  • Version 1.0: 2018-12-05
    Type: Initial release