5YKW

Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structural basis of the thiol resolving mechanism in yeast mitochondrial 1-Cys peroxiredoxin via glutathione/thioredoxin systems

Li, C.C.Yang, J.Yang, M.J.Liu, L.Peng, C.T.Li, T.He, L.H.Song, Y.J.Zhu, Y.B.Zhao, N.L.Zhao, C.Bao, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Thioredoxin-3, mitochondrial A106Saccharomyces cerevisiae S288CMutation(s): 1 
Gene Names: TRX3YCR083WYCR83W
Find proteins for P25372 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P25372 
Go to UniProtKB:  P25372
Protein Feature View
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  • Reference Sequence
  • Find similar proteins by:  Sequence   |   Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
peptide THR-PRO-VAL-CYS-THR-THR-GLU-VAL B8Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRX1YBL064CYBL0503YBL0524
EC: 1.11.1.25 (UniProt), 1.11.1.27 (UniProt)
Find proteins for P34227 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P34227 
Go to UniProtKB:  P34227
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.175 
  • R-Value Observed: 0.178 
  • Space Group: P 32
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 49.333α = 90
b = 49.333β = 90
c = 50.612γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-10-24
    Type: Initial release
  • Version 1.1: 2019-11-06
    Changes: Data collection, Database references