5YIF

Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.206 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Identification and characterization of a novel beta-D-galactosidase that releases pyruvylated galactose.

Higuchi, Y.Matsufuji, H.Tanuma, M.Arakawa, T.Mori, K.Yamada, C.Shofia, R.Matsunaga, E.Tashiro, K.Fushinobu, S.Takegawa, K.

(2018) Sci Rep 8: 12013-12013


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Pyruvylated beta-D-galactosidase
A, B
475Bacillus cereusMutation(s): 0 
Find proteins for A0A2B9BPQ7 (Bacillus cereus)
Go to UniProtKB:  A0A2B9BPQ7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
8VR
Query on 8VR

Download SDF File 
Download CCD File 
A, B
(2R,4aR,6R,7R,8R,8aR)-2-methyl-6,7,8-tris(oxidanyl)-4,4a,6,7,8,8a-hexahydropyrano[3,2-d][1,3]dioxine-2-carboxylic acid
C9 H14 O8
QVVFNJUJKXWFAU-CECBSOHTSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.206 
  • Space Group: P 32 2 1
Unit Cell:
Length (Å)Angle (°)
a = 114.780α = 90.00
b = 114.780β = 90.00
c = 150.434γ = 120.00
Software Package:
Software NamePurpose
HKL-2000data reduction
MOLREPphasing
REFMACrefinement
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-08-29
    Type: Initial release