5YCH

Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.354 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.171 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Tracing evolution of whale myoglobin by resurrecting ancient proteins

Isogai, Y.Imamura, H.Nakae, S.Sumi, T.Takahashi, K.Nakagawa, T.Tsuneshige, A.Shirai, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Ancestral myoglobin aMbWb of Basilosaurus relative (monophyly)
A
154N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
HEM
Query on HEM

Download SDF File 
Download CCD File 
A
PROTOPORPHYRIN IX CONTAINING FE
HEME
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.354 Å
  • R-Value Free: 0.207 
  • R-Value Work: 0.171 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 34.370α = 90.00
b = 30.430β = 105.81
c = 63.330γ = 90.00
Software Package:
Software NamePurpose
iMOSFLMdata reduction
PHENIXphasing
PHENIXrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Education, Culture, Sports, Science and Technology (Japan)JapanJP17H01818
Japan Agency for Medical Research and DevelopmentJapan17am0101069j0001

Revision History 

  • Version 1.0: 2018-09-19
    Type: Initial release