5YC9 | pdb_00005yc9

Crystal structure of a Pseudomonas aeruginosa transcriptional regulator

PDB DOI: https://doi.org/10.2210/pdb5YC9/pdb

Classification: TRANSCRIPTION
Organism(s): Pseudomonas aeruginosa
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-09-07 Released: 2019-03-20
Deposition Author(s): Harikiran, R., Rohan, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.307 (Depositor), 0.290 (DCC)
R-Value Work:
0.268 (Depositor), 0.260 (DCC)
R-Value Observed:
0.272 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a Pseudomonas aeruginosa transcriptional regulator

Harikiran, R., Sundararajan, R., Sharma, R.

To be published.

Macromolecule Content

Total Structure Weight: 133.76 kDa
Atom Count: 8,286
Modeled Residue Count: 1,006
Deposited Residue Count: 1,164
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
C-di-GMP-binding multidrug transporter transcriptional regulator BrlR	A, B, C, D	291	Pseudomonas aeruginosa	Mutation(s): 0 Gene Names: bmrR, brlR, AO964_25340, AOY09_00728, CAZ10_02115, CGU42_14110, CWI21_27955, PAERUG_E15_London_28_01_14_00871, RW109_RW109_06470
UniProt
Find proteins for Q9HUT5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HUT5 Go to UniProtKB: Q9HUT5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9HUT5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.307 (Depositor), 0.290 (DCC)
R-Value Work: 0.268 (Depositor), 0.260 (DCC)
R-Value Observed: 0.272 (Depositor)

Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 111.642	α = 90
b = 111.642	β = 90
c = 261.137	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2019-03-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2019-03-20
Type: Initial release
Version 1.1: 2024-03-27
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.