5Y93

Crystal Structure Analysis of the BRD4


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.184 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structure-Based Discovery and Optimization of Benzo[ d]isoxazole Derivatives as Potent and Selective BET Inhibitors for Potential Treatment of Castration-Resistant Prostate Cancer (CRPC)

Zhang, M.Zhang, Y.Song, M.Xue, X.Wang, J.Wang, C.Zhang, C.Li, C.Xiang, Q.Zou, L.Wu, X.Wu, C.Dong, B.Xue, W.Zhou, Y.Chen, H.Wu, D.Ding, K.Xu, Y.

(2018) J. Med. Chem. 61: 3037-3058

  • DOI: 10.1021/acs.jmedchem.8b00103
  • Primary Citation of Related Structures:  

  • PubMed Abstract: 
  • The bromodomain and extra-terminal (BET) family proteins have gained increasing interest as drug targets for treatment of castration-resistant prostate cancer (CRPC). Here, we describe the design, optimization, and evaluation of benzo[ d]isoxazole-co ...

    The bromodomain and extra-terminal (BET) family proteins have gained increasing interest as drug targets for treatment of castration-resistant prostate cancer (CRPC). Here, we describe the design, optimization, and evaluation of benzo[ d]isoxazole-containing compounds as potent BET bromodomain inhibitors. Cocrystal structures of the representative inhibitors in complex with BRD4(1) provided solid structural basis for compound optimization. The two most potent compounds, 6i (Y06036) and 7m (Y06137), bound to the BRD4(1) bromodomain with K d values of 82 and 81 nM, respectively. They also exhibited high selectivity over other non-BET subfamily members. The compounds potently inhibited cell growth, colony formation, and the expression of AR, AR regulated genes, and MYC in prostate cancer cell lines. Compounds 6i and 7m also demonstrated therapeutic effects in a C4-2B CRPC xenograft tumor model in mice. These potent and selective BET inhibitors represent a new class of compounds for the development of potential therapeutics against CRPC.


    Organizational Affiliation

    Graduate School of Medical Life Science, Yokohama City University, 1-7-29 Suehiro-cho, Tsurumi-ku, Yokohama 230-0045, Japan.,the Indian Institute of Science Education and Research, Pune 411008, India, and.,Research Institute for Interdisciplinary Science, Okayama University, 700-8530 Okayama, Japan.,Department of Integrative Structural and Computational Biology and the Skaggs Institute for Chemical Biology, The Scripps Research Institute, 10550 North Torrey Pines Road, BCC206, La Jolla, CA 92037, USA.,National Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathumthani 12120, Thailand.,Ferrier Research Institute, Victoria University of Wellington, Wellington 6140, New Zealand.,Center for Nano Science and Technology @Polimi, Istituto Italiano di Tecnologia, Via G. Pascoli 70/3, 20133, Milano, Italy. emilio.parisini@iit.it.,From the Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530.,Department of Plant and Microbial Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland.,Genome Integrity and Structural Biology Laboratory, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, United States.,MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK. cgt@mrc-lmb.cam.ac.uk.,Department of Chemistry and Biochemistry, University of Lethbridge, Alberta T1K 3M4, Canada.,Biomolecular Engineering Lab, Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milano, Italy.,Enzyme and Protein Chemistry, Section for Protein Chemistry and Enzyme Technology, Department of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads, 2800, Kgs. Lyngby, Denmark. premo@dtu.dk.,Chemistry Department, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.,School of Life Science, Anhui University, Hefei, China.,Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA; NSLS-II, Brookhaven National Laboratory, Upton, NY 11973, USA. Electronic address: qunliu@bnl.gov.,Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas, 77030, USA.,Materials and Structural Analysis, Thermo Fisher Scientific, Eindhoven, The Netherlands.,College of Chemistry, Beijing Normal University, Beijing, 100875, China.,IKERBASQUE, Basque Foundation for Science, 48013 Bilbao, Spain.,ARC Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia.,the Centre for Immune Regulation and Department of Immunology, University of Oslo and Oslo University Hospital, N-0372 Oslo, Norway.,Structural Genomics Consortium, University of Toronto, 101 College Street, Toronto, Ontario, M5G 1L7, Canada.,School of Biological Sciences, Nanyang Technological University, 637551, Singapore.,Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.,Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.,Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA bgraham@nih.gov.,Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA.,CEA, Institut des Sciences du Vivant Frédéric Joliot, Service d'Ingénierie Moléculaire des Protéines (SIMOPRO) , Université Paris-Saclay , Gif-sur-Yvette 91190 , France.,Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute-Frederick, Frederick, MD 21702, USA. Electronic address: burkete@helix.nih.gov.,Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.,Department of Molecular Biology, Umeå University, 90187 Umeå, Sweden.,Institute of Infection and Immunity, School of Medicine, Cardiff University, Cardiff CF14 4XN, UK.,The Key Laboratory of Biomedical Information Engineering of Ministry of Education, Institute of Health and Rehabilitation Science, School of Life Science and Technology, Xi'an Jiaotong University, Xi'an 710049, China.,MOH Key Laboratory of Medical Virology, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.,Institute for Biochemistry and Molecular Biology, University of Hamburg, 20146 Hamburg, Germany.,Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan.,Department of Refractory Viral Infections, National Center for Global Health and Medicine Research Institute, Tokyo, Japan hiroaki.mitsuya2@nih.gov.,Department of Biophysics, University of Texas Southwestern Medical Center, 6001 Forest Park Road, Dallas, TX 75390, USA.,Department of Microbiology, The Ohio State University, Columbus, OH, USA.,Department of Infectious Diseases and Microbiology , University of Lübeck , 23562 Lübeck , Germany.,Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA. kahne@chemistry.harvard.edu.,Astex Pharmaceuticals, Cambridge, United Kingdom.,Schaller Research Group at the University of Heidelberg and the DKFZ, Heidelberg, Germany.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China. shaofeng@nibs.ac.cn.,Bridge Institute,USC Michelson Center for Convergent Biosciences, University of Southern California, Los Angeles, CA, USA. cherezov@usc.edu.,Institute of Bioinformatics and Structural Biology, National Tsing Hua University, Hsinchu, 300, Taiwan.,INSERM, U1108, Paris, France.,Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan. nisimasu@bs.s.u-tokyo.ac.jp nureki@bs.s.u-tokyo.ac.jp.,Edgewood Chemical Biological Center, United States Army , Aberdeen Proving Ground, Aberdeen , Maryland 21010 , United States.,Max Planck Institute of Biochemistry , 82152 Martinsried , Germany.,Research School of Chemistry, Australian National University, Canberra, ACT 2601, Australia.,Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Str. 25, 81377 Munich, Germany.,Department of Biology, New York University, New York, NY 10003.,Univ. Grenoble Alpes, CNRS, CEA, IBS, 38000 Grenoble, France. Electronic address: cecile.morlot@ibs.fr.,Max Planck Institute for Chemical Energy Conversion, 45470 Mülheim an der Ruhr, Germany.,Array BioPharma, Inc., 3200 Walnut Street, Boulder, Colorado 80301, United States.,the Bioinformatics Institute, Singapore 138671, Singapore.,Laboratory Molecular and Cellular Signaling, Department Cellular and Molecular Medicine, Campus Gasthuisberg O/N-I Bus 802, Herestraat 49 3000 Leuven, Belgium.,Research Division, Chugai Pharmaceutical Co., Ltd., Kanagawa, Japan.,University of Chinese Academy of Sciences, Beijing 100049, China.,Genmab, Yalelaan 60, 3584 CM Utrecht, Netherlands. t.sharp@lumc.nl p.w.h.i.parren@lumc.nl p.gros@uu.nl.,School of Nanoscience and Technology, IIT Kharagpur, Kharagpur, 721302, India. Electronic address: anupam.midya@iitkgp.ac.in.,D3-PharmaChemistry, Istituto Italiano di Tecnologia, Via Morego 30, 16163, Genova, Italy.,Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA; NSLS-II, Brookhaven National Laboratory, Upton, NY 11973, USA.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, 100093 Beijing, China.,Institute of Technology, University of Tartu, 50411 Tartu, Estonia.,Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan. janschu@biochem.mpg.de gkurisu@protein.osaka-u.ac.jp marc.m.nowaczyk@rub.de.,Department of Physics, Arizona State University, Tempe, AZ, USA.,Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom; Institute for Evolution and Biodiversity, University of Münster, Hüfferstrasse 1, D-48149 Münster, Germany.,Research Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan.,Key Laboratory of Chemical Biology and Traditional Chinese Medicine Research (Ministry of Education), College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha 410081, China.,Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138.,Department of Biological Sciences, Purdue University, West Lafayette, Indiana, USA mr@purdue.edu.,Department of Medical Laboratories Technology, College of Applied Medical Sciences, Jazan University, Jazan, Saudi Arabia.,Institute of Chemistry, Centre of Arts, Humanities and Sciences, University of Debrecen, Hungary.,MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK.,Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom. Electronic address: fh111@cam.ac.uk.,Department of Infectious Diseases, Virology, University of Heidelberg, Heidelberg, Germany.,School of Pharmaceutical Sciences , Jilin University , No. 1266 Fujin Road , Chaoyang District, Changchun , Jilin 130021 , China.,Division of Microbiology and Molecular Genetics, Loma Linda University, Loma Linda, CA, 92350, USA.,College of Life Sciences, University of Chinese Academy of Sciences, Beijing, China.,Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany. janschu@biochem.mpg.de gkurisu@protein.osaka-u.ac.jp marc.m.nowaczyk@rub.de.,Department of Pharmacology, Howard Hughes Medical Institute.,Institute for Advanced Biosciences, Keio University, 14-1 Baba-cho, Tsuruoka, Yamagata 997-0035, Japan.,School of Nanoscience and Technology, IIT Kharagpur, Kharagpur, 721302, India.,Centro de Química Estrutural, Instituto Superior Técnico , Universidade de Lisboa , Av. Rovisco Pais 1 , 1049-001 Lisboa , Portugal.,Department of Cellular Logistics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.,Department of Medicine, University of Maryland School of Medicine, Baltimore, Maryland 21201, United States.,School of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, AZ, USA.,Biology Department, Brookhaven National Laboratory, Upton, NY 11793.,Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada brian.mark@umanitoba.ca.,Department of Molecular Biology and Genetics, Aarhus University, Gustav Wieds vej 10C, 8000, Aarhus, Denmark.,Structural Biology and NMR Laboratory and the Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, 2200 Copenhagen N, Denmark.,Department of Clinical Sciences, Kumamoto University Hospital, Kumamoto, Japan.,MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Cambridge, UK. radu@mrc-lmb.cam.ac.uk.,From the Department of Chemistry and Biochemistry, rclubb@mbi.ucla.edu.,MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, UK.,Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences , Guangzhou 510530 , China.,Institute of Molecular and Cell Biology, Functional Proteomics Laboratory, Agency for Science, Technology and Research (A*STAR), 138673, Singapore.,McGovern Institute for Brain Research, Cambridge, MA 02139, USA.,Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.,Graduate School Materials Science in Mainz, Johannes Gutenberg-Universität Mainz, Staudinger Weg 9, 55128, Mainz, Germany.,Department of Structural Cell Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany. janschu@biochem.mpg.de gkurisu@protein.osaka-u.ac.jp marc.m.nowaczyk@rub.de.,School of Chemistry, University of Southampton, Southampton SO17 1BJ, United Kingdom.,Beijing Mingde Zhengkang Technologies Co., Ltd., Beijing, China.,Department of Psychiatry, Columbia University Vagelos College of Physicians and Surgeons, New York, NY 10032, USA; Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, NY 10032, USA. Electronic address: mq2102@cumc.columbia.edu.,Structural Biology and NMR Laboratory and the Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, 2200 Copenhagen N, Denmark. Electronic address: kaare.teilum@bio.ku.dk.,Department of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA; Faculté de Médecine, Département de Microbiologie, infectiologie et immunologie, Université de Montréal, C.P. 6128, Succursale Centre-ville, Montréal, QC H3C 3J7, Canada. Electronic address: yves.brun@umontreal.ca.,the Division of Material Science, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan.,Department of Immunohematology and Blood Transfusion, Leiden University Medical Center, Albinusdreef 2, 2333 ZA Leiden, Netherlands.,Helmholtz Centre for Infection Research , 38124 Braunschweig , Germany.,School of Life Sciences, University of Warwick, Coventry CV4 7AL, United Kingdom.,Structural Biology Center, Biosciences, Argonne National Laboratory, 9700 S Cass Avenue, Argonne, IL 60439, USA.,Biomolecular Engineering Lab, Dipartimento di Elettronica, Informazione e Bioingegneria, Politecnico di Milano, Piazza Leonardo da Vinci 32, 20133, Milano, Italy. alfonso.gautieri@polimi.it.,Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, Netherlands. t.sharp@lumc.nl p.w.h.i.parren@lumc.nl p.gros@uu.nl.,National Institute of Mental Health Psychoactive Drug Screening Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032.,Research Division, Chugai Pharmaceutical Co., Ltd., Kanagawa, Japan tanaka.hiroshi@chugai-pharm.co.jp.,Univ Lille, Inserm, CHU Lille, UMR-S 1172 - JPArc - Centre de Recherche Jean-Pierre AUBERT Neurosciences et Cancer, Lille, France.,Mirati Therapeutics, Inc., 9393 Towne Centre Drive, Suite 200, San Diego, California 92121, United States.,Structural Biology and NMR Laboratory and the Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, 2200 Copenhagen N, Denmark; Structural Studies Division, MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, UK. Electronic address: serlends@mrc-lmb.cam.ac.uk.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA. kahne@chemistry.harvard.edu.,Manufacturing, Commonwealth Scientific and Industrial Research Organization (CSIRO) , Clayton , Vic 3168 , Australia.,Department of Pharmaceutical Sciences, University of Maryland School of Pharmacy, Baltimore, Maryland 21201, United States.,Institute for Experimental Medical Research, Oslo University Hospital, 0424, Oslo, Norway. premo@dtu.dk.,Department of Chemistry, University of Southern California, Los Angeles, CA, USA. cherezov@usc.edu.,Department of Pharmaceutical and Biomedical Sciences , University of Georgia , Athens , Georgia 30602 , United States.,Division of Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dundee, UK.,Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.,Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom; Department of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.,Neuroscience Graduate Program, Brown University, Providence, RI, USA.,State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; wah2@cumc.columbia.edu yuhang.chen@genetics.ac.cn.,School of Life Science , Huizhou University , Huizhou 516007 , China.,Crystal and Structural Chemistry, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, Netherlands.,Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.,Technical University Darmstadt , Alarich-Weiss-Straße 4 , 64287 Darmstadt , Germany.,Department of Chemistry, University of Natural Resources and Life Sciences, Vienna, Austria.,Department of Biochemistry and Molecular Medicine, School of Medicine , University of California, Davis , Sacramento , California 95817 , United States.,Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY, 14850, USA.,Department of Microbiology and Immunology, National University of Singapore, 117545 Singapore.,New York Structural Biology Center , New York , New York 10027 , United States.,the Centre for Immune Regulation and Department of Immunology, University of Oslo and Oslo University Hospital, N-0372 Oslo, Norway l.m.sollid@medisin.uio.no.,National Institute of Biological Sciences, Beijing, China.,Instituto de Bionanotecnología del NOA, Consejo Nacional de Investigaciones Científicas y Técnicas, Universidad Nacional de Santiago del Estero, G4206XCP Santiago del Estero, Argentina.,Graduate School of Pharmaceutical Sciences, Tohoku University, 6-3, Aoba, Aramaki, Aoba-ku, Sendai, Miyagi, 980-8578, Japan.,Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.,Department of Biology and Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.,Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.,Department of Pediatrics, Vanderbilt University Medical Center, Nashville, Tennessee, USA.,College of Animal Science and Technology, China Agricultural University, Beijing, China.,Edward Doisy Department of Biochemistry and Molecular Biology, Saint Louis University School of Medicine, St. Louis, MO, USA.,Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India.,Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK.,MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, Key Laboratory of Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China. dhlin@xmu.edu.cn.,Department of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.,German Center for Infection Research, Partner Site Munich, Munich, Germany.,Division of Bioconvergence Analysis, Korea Basic Science Institute, 162 Yeongudangiro Ochang, Cheongwongu, Cheongju, Chungbuk 28119, South Korea.,Division of Viral Disease, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.,Japan Agency for Medical Research and Development, Core Research for Evolutional Science and Technology (AMED-CREST), Tokyo, 100-0004, Japan.,Department of Biochemistry, Faculty of Medicine and Dentistry, University of Alberta, Edmonton, Canada.,Department of Chemistry, Simon Fraser University, Burnaby, British Columbia, Canada.,MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Cambridge, UK. simonasm@mrc-lmb.cam.ac.uk.,Hefei National Laboratory for Physical Science at Microscale, School of Life Science, University of Science and Technology of China, Hefei, China.,From the Department of Chemistry and ckim7@utep.edu.,NHC Key Laboratory of Cancer Proteomics & Laboratory of Structural Biology, Xiangya Hospital, Central South University, Changsha, Hunan 410008, China. yonghenc@163.com.,Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels, Belgium.,Dipartimento di Farmacia , Università di Pisa , Via Bonanno 6 , 56126 Pisa , Italy.,Laboratory for Molecular Infection Medicine Sweden, Umeå University, 90187 Umeå, Sweden.,Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,Bridge Institute,USC Michelson Center for Convergent Biosciences, University of Southern California, Los Angeles, CA, USA.,Section of Electron Microscopy, Department of Molecular Cell Biology, Leiden University Medical Center, Einthovenweg 20, 2300 RC Leiden, Netherlands.,Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, MN 55455, United States.,Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM 87545, USA.,Guangdong Provincial Key Laboratory of Biocomputing, Joint School of Life Sciences , Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences ; Guangzhou Medical University, Guangzhou 510530 , China.,Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.,Department of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA.,Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan. Electronic address: amaejima@mail.ecc.u-tokyo.ac.jp.,Purdue Center for Cancer Research, Purdue University , West Lafayette , Indiana 47907 , United States.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115.,IMED Oncology, AstraZeneca, Waltham, Massachusetts 02451, USA. neil.grimster@astrazeneca.com.,Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, United States.,Synchrotron SOLEIL , L'Orme des Merisiers, Saint-Aubin, BP 48, 91192 Gif-sur-Yvette , France.,Department of Biochemistry and Cellular Biology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA.,From the Department of Chemistry and Biochemistry.,Structural Genomics Consortium, University of Toronto , 101 College Street, Toronto, ON M5G 1L7, Canada.,University of Chinese Academy of Sciences, 100049 Beijing, China.,Department of Refractory Viral Infections, National Center for Global Health and Medicine Research Institute, Tokyo, Japan.,Imevax GmbH, Munich, Germany.,Computational Chemistry and Molecular Biophysics Unit, National Institute on Drug Abuse - Intramural Research Program, National Institutes of Health, Baltimore, MA 21224, USA. Electronic address: lei.shi2@nih.gov.,Department of Pharmacy, Uppsala University, SE-75232, Uppsala, Sweden; Department of Pharmacy, University of Copenhagen, DK-2100, Copenhagen, Denmark. Electronic address: martin.malmsten@farmaci.uu.se.,Department of Microbiology, The Ohio State University, Columbus, OH, USA. ruiz.82@osu.edu.,Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.,Department of Chemistry, University of Oslo, Sem Sælands vei 26, 0371, Oslo, Norway. michele.cascella@kjemi.uio.no.,Structural Biology Unit, CIC bioGUNE, Bizkaia Technology Park, 48160 Derio, Spain.,Molecular and Computational Biology Program, Department of Biological Sciences and Department of Chemistry, University of Southern California, Los Angeles, California 90089, USA.,Department of Agricultural Chemistry, National Taiwan University, Taipei, 106, Taiwan. andyhsu@ntu.edu.tw.,Department of Molecular and Cellular Oncology, The University of Texas MD Anderson Cancer Center, 1515 Holcombe Boulevard, Houston, Texas, 77030, USA. mglee@mdanderson.org.,Protein Crystal Analysis Division, Japan Synchrotron Radiation Research Institute, Hyogo, Japan.,Virus Ecology Unit, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA.,Guangzhou Regenerative Medicine and Health Guangdong Laboratory (GRMH-GDL) , Guangzhou 510530 , China.,State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, 100084 Beijing, China.,Hylleraas Centre for Quantum Molecular Sciences, University of Oslo, Sem Saelands vei 26, 0371, Oslo, Norway. michele.cascella@kjemi.uio.no.,Department of Biochemistry , Purdue University , West Lafayette , Indiana 47907 , United States.,Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom. Electronic address: mh256@cam.ac.uk.,Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX 77555, USA.,Central European Institute of Technology, Masaryk University, 62500 Brno, Czech Republic.,Norwegian Center for Molecular Medicine, Nordic EMBL Partnership University of Oslo, Gaustadalléen 21, 0349, Oslo, Norway.,Division of Microbiology, Department of Biology, Friedrich Alexander University Erlangen, Erlangen, Germany.,The Center for RNA Biology, The Ohio State University, Columbus, United States.,State Key Laboratory of Membrane Biology, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, 100084 Beijing, China; suisf@mail.tsinghua.edu.cn shen@cc.okayama-u.ac.jp.,Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech University, Shanghai 201210, China.,Department of Chemistry, University of Oslo, Sem Sælands vei 26, 0371, Oslo, Norway.,National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.,Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.,Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Brussels, Belgium han.remaut@vub.be.,Department of Pharmacology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.,Institute of Molecular Systems Biology and Department of Health Sciences and Technology, ETH Zürich, Otto-Stern-Weg 3, 8093 Zürich, Switzerland.,SAXS/WAXS, Australian Synchrotron/ANSTO, 800 Blackburn Road, Clayton, VIC 3168, Australia.,Department of Pharmaceutical Sciences, University of Maryland School of Pharmacy, Baltimore, MD 21201, USA.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China.,Department of Structural Biochemistry, Max Planck Institute of Molecular Physiology, Otto-Hahn-Strasse 11, 44227 Dortmund, Germany.,Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, USA.,Department of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032.,VIB-VUB Center for Structural Biology, VIB, Brussels, Belgium.,National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 201602 Shanghai, China; jacobsen@ucla.edu jmdu@sibs.ac.cn.,CAS Center for Excellence in Biomacromolecules, Beijing 100101, China.,NeCEN, Gorlaeus Laboratories, Leiden University, 2333 CC Leiden, Netherlands.,Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute-Frederick, Frederick, MD 21702, USA.,Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, 106, Taiwan.,Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan. nureki@bs.s.u-tokyo.ac.jp.,Department of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, RI, USA.,Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea.,Crystalgenomics, Inc., 5F, Tower A, Korea Bio Park 700, Daewangpangyo-ro, Bundang-gu, Seongnam-si, Gyeonggi-do 13524, South Korea.,School of Life Sciences, University of Science and Technology of China, Hefei, 230026, China.,Department of Biochemistry, University of Cambridge, 80 Tennis Court Road, Cambridge CB2 1GA, United Kingdom.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China.,Department of Biophysics, Bose Institute, Kolkata, 700054, India.,Institute of Oceanography, Minjiang University, 350108 Fuzhou, China.,School of Pharmacy , Jinan University , 601 Huangpu Avenue West , Guangzhou 510632 , China.,State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.,Department of Chemistry, University of Southern California, Los Angeles, CA, USA.,Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, USA.,Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario, K7L 3N6, Canada. jia@queensu.ca.,Norwegian Center for Molecular Medicine, Nordic EMBL Partnership University of Oslo, Gaustadalléen 21, 0349, Oslo, Norway. premo@dtu.dk.,Dipartimento di Scienze della Terra , Università di Pisa , via Santa Maria 53 , 56126 Pisa , Italy.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA. andrew_kruse@hms.harvard.edu.,Center for Free-Electron Laser Science, DESY, Hamburg, Germany.,School of Biosciences, University of Nottingham, Sutton Bonington Campus, Leicestershire LE12 5RD, United Kingdom.,Photon Science, Deutsches Elektronen-Synchrotron, Hamburg 22607, Germany.,Institute for Medical Microbiology, Immunology and Hygiene, Technische Universität München, Munich, Germany.,MRC Protein Phosphorylation and Ubiquitylation Unit, University of Dundee, Dundee, UK. s.s.virdee@dundee.ac.uk.,Maurice Wilkins Centre for Molecular Biodiscovery, University of Auckland, Auckland 1142, New Zealand.,RNA Therapeutics Institute and Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.,Institute of Medical Microbiology and Hygiene, University of Regensburg, Regensburg, Germany.,Division of Structural Biology, Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK. radu@mrc-lmb.cam.ac.uk.,State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.,Institute of Fundamental Sciences and the Riddet Institute, Massey University, Palmerston North 4442, New Zealand.,University of Chinese Academy of Sciences , No. 19 Yuquan Road , Beijing 100049 , China.,School of Pharmaceutical Sciences , Sun Yat-Sen University , Guangzhou 510006 , China.,Institut de Biologie Intégrative de la Cellule (I2BC), IBITECS, CEA, CNRS, Université Paris-Saclay, F-91198 Gif-sur-Yvette, France.,Photosynthesis Research Center, Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, 100093 Beijing, China; suisf@mail.tsinghua.edu.cn shen@cc.okayama-u.ac.jp.,Institute of Neuropathology, University of Zurich, Switzerland.,Department of Cell Biology, Neurobiology and Anatomy, Medical College of Wisconsin, Milwaukee, WI, USA.,Institute for Genetics, University of Cologne, Cologne, Germany.,Tsinghua Institute of Multidisciplinary Biomedical Research, Tsinghua University, Beijing, China. shaofeng@nibs.ac.cn.,Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan.,Faculty of Bioscience, Hosei University, 3-7-2 Kajino-cho, Koganei-shi, Tokyo, 184-8584, Japan.,Synthetic Biology for Clinical and Technological Innovation, Life Sciences Institute, National University of Singapore, 117456 Singapore, Singapore.,National Institute of Biological Sciences, Beijing, China. shaofeng@nibs.ac.cn.,Department of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka 560-0043, Japan.,University of Lübeck , 23562 Lübeck , Germany.,Structural Biology Brussels, Vrije Universiteit Brussel, Brussels, Belgium.,Lehrstuhl Biopolymere und Forschungszentrum für Bio-Makromoleküle, Universität Bayreuth, Bayreuth, Germany.,Institut für Physikalische Chemie, Johannes Gutenberg-Universität Mainz, Duesbergweg 10-14, 55128, Mainz, Germany.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China. Electronic address: yesheng@ibp.ac.cn.,Institute of Anatomy, Medical Faculty, University of Duisburg-Essen, Essen, Germany.,Department of Physics, IIT Kharagpur, Kharagpur, 721302, India.,ISIS Neutron and Muon Spallation Source and Research Complex at Harwell, Rutherford Appleton Laboratory, Oxfordshire, United Kingdom.,Department of Urology, Renji Hospital, School of Medicine , Shanghai Jiao Tong University , Shanghai 200127 , China.,School of Pharmaceutical Sciences, Sun Yat-sen University, Guangzhou, 510006, China.,Guangdong Provincial Key Laboratory of Biocomputing, Joint School of Life Sciences, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences ; Guangzhou Medical University , Guangzhou , China.,Institute for Biochemistry and Molecular Biology, University of Hamburg, 20146 Hamburg, Germany; daniel.wilson@chemie.uni-hamburg.de.,Department of Physiology and Cellular Biophysics, Columbia University, New York, NY 10032; wah2@cumc.columbia.edu yuhang.chen@genetics.ac.cn.,Nano Medical Engineering Laboratory, RIKEN Cluster of Pioneering Research, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan.,New York Consortium on Membrane Protein Structure, New York Structural Biology Center, New York, NY 10027, USA.,Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan.,RIKEN SPring-8 Center, Hyogo, 679-5148, Japan.,Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.,College of Chemistry, Beijing Normal University, Beijing, 100875, China. jimin_z@bnu.edu.cn.,Howard Hughes Medical Institute, University of California, Los Angeles, CA 90095.,Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea. Electronic address: chahong@korea.ac.kr.,Genome and Systems Biology Degree Program, National Taiwan University and Academia Sinica, Taipei, 106, Taiwan. andyhsu@ntu.edu.tw.,Department of Biophysics, All India Institute of Medical Sciences, New Delhi, India. Electronic address: tpsingh.aiims@gmail.com.,Department of Biology, Southern University of Science and Technology of China, Shenzhen, 518055 Guangdong, China.,School of Biological Sciences , Nanyang Technological University , 639798 Singapore.,Departments of Chemistry and Department of Medicinal Chemistry, Purdue University, West Lafayette, IN, United States.,Daiichi Sankyo Deutschland GmbH, Zielstattstr. 48, 81379 München, Germany.,Genmab, Yalelaan 60, 3584 CM Utrecht, Netherlands.,Institute of Medical Biology, Agency for Science, Technology and Research (A*STAR), 138648, Singapore.,Department of Anesthesia, Critical Care and Pain Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA.,Hauptman-Woodward Institute, Department of Structural Biology, Jacobs School of Medicine and Biomedical Sciences, University at Buffalo, Buffalo, NY, USA.,Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115; andrew_kruse@hms.harvard.edu.,Center for Nano Science and Technology @Polimi, Istituto Italiano di Tecnologia, Via G. Pascoli 70/3, 20133, Milano, Italy.,School of Biological Sciences, Nanyang Technological University, 637551, Singapore. pnordlund@ntu.edu.sg zbozdech@ntu.edu.sg.,Institute for Protein Research, Osaka University, Suita, Osaka 565-0871, Japan.,College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, China.,MOE Key Laboratory of Spectrochemical Analysis & Instrumentation, Key Laboratory of Chemical Biology of Fujian Province, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, 361005, China.,Department of Biophysics, Bose Institute, Kolkata, 700054, India. Electronic address: bhunia@jcbose.ac.in.,Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, USA.,University of Applied Sciences and Arts Northwestern Switzerland, Hofackerstrasse 30, CH-4132, Muttenz, Switzerland.,Department of Biotechnology, IIT Madras, Chennai, 600036, India.,State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China syf@mail.hzau.edu.cn.,Department of Biochemistry, Duke University School of Medicine, Durham, United States.,Department of Biology and Biochemistry , University of Bath , Claverton Down , Bath BA2 7AY , United Kingdom.,Department of Anesthesia, Critical Care and Pain Medicine, Massachusetts General Hospital, Harvard Medical School, Boston, MA, USA. kwmiller@mgh.harvard.edu.,Department of Biology, Molecular Basis of Disease Program, Department of Computer Science, and Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States.,Biomolecular Interaction Centre and School of Physical and Chemical Sciences, University of Canterbury, Christchurch 8041, New Zealand emily.parker@vuw.ac.nz g.b.jameson@massey.ac.nz.,Infection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia.,Stanford University, Department of Structural Biology, Stanford, CA, USA.,the Department of Biological Sciences, National University of Singapore, Singapore 117543, Singapore.,UCLA-DOE Institute of Genomics and Proteomics and.,Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany.,Structural Genomics Consortium, University of Toronto, 101 College Street, Toronto, Ontario, M5G 1L7, Canada. jr.min@utoronto.ca.,Laboratory of Biomolecular Research, Division of Biology and Chemistry , Paul Scherrer Institute , 5232 Villigen , Switzerland.,Department of Cellular Logistics, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany goerlich@mpibpc.mpg.de.,Department of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095; jacobsen@ucla.edu jmdu@sibs.ac.cn.,School of Molecular Sciences and Biodesign Center for Applied Structural Discovery, Biodesign Institute, Arizona State University, Tempe, AZ, USA. w.liu@asu.edu.,Shanghai Public Health Clinical Center and School of Basic Medical Sciences, and Key Laboratory of Medical Molecular Virology of MOE/MOH, Fudan University, Shanghai 200032, China.,Department of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, RI, USA nicolas_fawzi@brown.edu.,Section of Electron Microscopy, Department of Molecular Cell Biology, Leiden University Medical Center, Einthovenweg 20, 2300 RC Leiden, Netherlands. t.sharp@lumc.nl p.w.h.i.parren@lumc.nl p.gros@uu.nl.,Department of Chemistry and Department of Medicinal Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.,State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, China.,Institute of Immunology, Friedrich-Loeffler Institut, Greifswald-Insel Riems, Germany.,AbbVie Inc. , 1 North Waukegan Road, North Chicago, Illinois 60064, United States.,Schaller Research Group at the University of Heidelberg and the DKFZ, Heidelberg, Germany g.hansman@dkfz.de.,the Department of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902.,Crystalgenomics, Inc., 5F, Tower A, Korea Bio Park 700, Daewangpangyo-ro, Bundang-gu, Seongnam-si, Gyeonggi-do 13524, South Korea; Division of Biotechnology, College of Life Sciences and Biotechnology, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul 02841, South Korea.,Biology Department, Brookhaven National Laboratory, Upton, NY 11973, USA.,Department of Integrative Biomedical Sciences, Institute of Infectious Disease and Molecular Medicine , University of Cape Town , Observatory , 7925 Cape Town , Republic of South Africa.,Department of Microbiology, The Ohio State University, Columbus, United States.,Developmental Therapeutics Branch and Laboratory of Molecular Pharmacology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, United States.,Max Planck Institute for Molecular Genetics, Berlin, Germany.,Computational Chemistry and Molecular Biophysics Unit, National Institute on Drug Abuse - Intramural Research Program, National Institutes of Health, Baltimore, MA 21224, USA.,Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, 113-0033, Japan. t-2438@bs.s.u-tokyo.ac.jp.,Institute of Human Virology, Department of Microbiology & Immunology, and Program in Molecular Microbiology & Immunology, University of Maryland School of Medicine, Baltimore, Maryland 21201, United States.,Molecular Biology Institute, UCLA, Los Angeles, California 90095.,Division of Molecular Medicine, Bose Institute, Kolkata, 700054, India.,Department of Biochemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland. Electronic address: caflisch@bioc.uzh.ch.,Chemical Biology and Molecular Biophysics, Taiwan International Graduate Program, Academia Sinica., Taipei, 115, Taiwan.,Institute of Biomedical Sciences, Academia Sinica, Taipei, 115, Taiwan. bmchinp@ibms.sinica.edu.tw.,Structural and Molecular Microbiology, Structural Biology Research Center, VIB, Brussels, Belgium.,Lindsley F. Kimball Research Institute, New York Blood Center, New York, NY 10065, USA.,Department of Translational Research in Psychiatry , Max Planck Institute of Psychiatry , 80804 Munich , Germany.,From the Research Institute for Interdisciplinary Science, Graduate School of Natural Science and Technology, Okayama University, Okayama 700-8530, shen@cc.okayama-u.ac.jp.,Graduate School of Natural Science and Technology, Okayama University, 700-8530 Okayama, Japan.,Department of Pharmacology and Molecular Therapeutics, Uniformed Services University, Bethesda, MD, USA.,School of Chemistry, National University of Ireland, University Road, Galway, Ireland.,Department of Biochemistry, University of Zurich, Winterthurerstrasse 190, CH-8057, Zurich, Switzerland.,Graduate Program in Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, USA.,School of Biological Sciences & Maurice Wilkins Centre , University of Auckland , Auckland 1010 , New Zealand.,Graduate School of Pharmaceutical Sciences, Osaka University, 1-6 Yamadaoka, Suita, Osaka 565-0871, Japan.,Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA. cherezov@usc.edu.,SLAC National Accelerator Laboratory, Bioscience Division, Menlo Park, CA, USA.,Department of Microbiology and Immunobiology, Harvard Medical School, Boston, MA 02115.,MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Cambridge, UK.,National Institute of Mental Health Psychoactive Drug Screening Program, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.,Institute for Evolution and Biodiversity, University of Münster, Hüfferstrasse 1, D-48149 Münster, Germany.,Center for Drug Design, Academic Health Center, University of Minnesota, Minneapolis, MN 55455, United States. Electronic address: wangx472@umn.edu.,Center for Drug Design, Academic Health Center, University of Minnesota, Minneapolis, MN 55455, United States.,Experimental Retrovilogy Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, United States.,Graduate School of Media and Governance, Keio University, 5322 Endo, Fujisawa, Kanagawa 252-0882, Japan.,School of Pharmaceutical Sciences , Jilin University , No.1266 Fujin Road , Chaoyang District, Changchun , Jilin 130021 , China.,Division of Chemical Biology and Medicinal Chemistry, Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA. bryan_roth@med.unc.edu.,Department of Chemistry, University of Waterloo, Waterloo, Ontario, N2L3G1, Canada.,Department of Agricultural and Environmental Biology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan.,the Japan Science and Technology Agency, PRESTO, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, and.,Chemical Sciences Division, National Institute of Standards and Technology, 100 Bureau Drive, Stop 8391, Gaithersburg, MD 20899-8391, USA.,Biomolecular Interaction Centre and School of Physical and Chemical Sciences, University of Canterbury, Christchurch 8041, New Zealand.,Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, MD 21201, USA.,Department of Systems Biology, Harvard Medical School, Boston, MA 02115.,Technische Universität Braunschweig , 38106 Braunschweig , Germany.,Department of Oncology and Pathology, Karolinska Institutet, Stockholm 17177, Sweden.,Department of Pharmacology, Howard Hughes Medical Institute. Electronic address: hongtao.yu@utsouthwestern.edu.,Ipsen Bioinnovation Limited, Abingdon, United Kingdom.,Astex Pharmaceuticals, Cambridge, United Kingdom. George.ward@astx.com.,National Key Laboratory of Plant Molecular Genetics, Chinese Academy of Sciences Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 201602 Shanghai, China.,Pasteur Institute, Viral Pathogenesis Unit, Paris, France.,Department of Microbiology, University of Manitoba, Winnipeg, Manitoba, Canada.,Department of Physiology, University of Toronto, Toronto, Ontario, M5S 1A8, Canada. jr.min@utoronto.ca.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China; National Center for Protein Science Shanghai, Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 201203, People's Republic of China. Electronic address: rzhang@ibp.ac.cn.,National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, People's Republic of China; University of Chinese Academy of Sciences, Beijing 100049, People's Republic of China.,Plant Biochemistry, Faculty of Biology and Biotechnology, Ruhr University Bochum, 44780 Bochum, Germany.,Department of Biology, Indiana University, 1001 E. 3rd Street, Bloomington, IN 47405, USA; Faculté de Médecine, Département de Microbiologie, infectiologie et immunologie, Université de Montréal, C.P. 6128, Succursale Centre-ville, Montréal, QC H3C 3J7, Canada.,School of Pharmacy, University of Texas at El Paso, El Paso, Texas 79968.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Bromodomain-containing protein 4
A
141Homo sapiensMutation(s): 0 
Gene Names: BRD4 (HUNK1)
Find proteins for O60885 (Homo sapiens)
Go to Gene View: BRD4
Go to UniProtKB:  O60885
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
8Q9
Query on 8Q9

Download SDF File 
Download CCD File 
A
2-[[5-[(5-bromanyl-2-methoxy-phenyl)sulfonylamino]-3-methyl-1,2-benzoxazol-6-yl]oxy]-N-(2-morpholin-4-ylethyl)ethanamide
C23 H27 Br N4 O7 S
BONQAYQBVVFMQB-UHFFFAOYSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
NO3
Query on NO3

Download SDF File 
Download CCD File 
A
NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.62 Å
  • R-Value Free: 0.210 
  • R-Value Work: 0.184 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 35.040α = 90.00
b = 47.120β = 90.00
c = 78.030γ = 90.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
REFMACrefinement
MERLOTphasing
Aimlessdata scaling
iMOSFLMdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-06-13
    Type: Initial release