5Y91

The structure of the MHC class I molecule of bony fishes provides insights into the conserved nature of the antigen-presenting system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.901 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.190 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of bony fish MHC class I complex at 1.9 Angstroms resolution.

Zhaosan, C.Nianzhi, Z.Chun, X.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC class I antigen
A
275Ctenopharyngodon idellaMutation(s): 0 
Gene Names: UAA106
Find proteins for Q65XY8 (Ctenopharyngodon idella)
Go to UniProtKB:  Q65XY8
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
116Ctenopharyngodon idellaMutation(s): 0 
Gene Names: B2m
Find proteins for Q65XZ7 (Ctenopharyngodon idella)
Go to UniProtKB:  Q65XZ7
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
PEPTIDE PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILE
C
9Spring viremia of carp virusMutation(s): 0 
Gene Names: L
Find proteins for Q91DR9 (Spring viremia of carp virus)
Go to UniProtKB:  Q91DR9
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.901 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.190 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 119.280α = 90.00
b = 50.413β = 124.08
c = 86.077γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
HKL-2000data scaling
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-09-20
    Type: Initial release