5Y91

The structure of the MHC class I molecule of bony fishes provides insights into the conserved nature of the antigen-presenting system


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 

wwPDB Validation   3D Report Full Report



Literature

Crystal structure of bony fish MHC class I complex at 1.9 Angstroms resolution.

Zhaosan, C.Nianzhi, Z.Chun, X.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
MHC class I antigenA275Ctenopharyngodon idellaMutation(s): 0 
Gene Names: UAA106
Find proteins for Q65XY8 (Ctenopharyngodon idella)
Explore Q65XY8 
Go to UniProtKB:  Q65XY8
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Beta-2-microglobulinB116Ctenopharyngodon idellaMutation(s): 0 
Gene Names: B2m
Find proteins for Q65XZ7 (Ctenopharyngodon idella)
Explore Q65XZ7 
Go to UniProtKB:  Q65XZ7
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
PEPTIDE PHE-ALA-ASN-PHE-CYS-LEU-MET-MET-ILEC9Carp sprivivirusMutation(s): 0 
Gene Names: L
EC: 2.7.7.48 (UniProt), 2.1.1.56 (UniProt), 2.7.7.88 (UniProt), 2.1.1.296 (UniProt)
Find proteins for Q91DR9 (Spring viremia of carp virus)
Explore Q91DR9 
Go to UniProtKB:  Q91DR9
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.190 
  • R-Value Observed: 0.192 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 119.28α = 90
b = 50.413β = 124.08
c = 86.077γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2017-09-20
    Type: Initial release