Macromolecule Content

Total Structure Weight: 37.11 kDa
Atom Count: 2692
Residue Count: 313
Unique protein chains: 1

5Y7N

Crystal structure of AKR1B10 in complex with NADP+ and Androst-4-ene-3-beta-6-alpha-diol

DOI: 10.2210/pdb5Y7N/pdb

Classification: OXIDOREDUCTASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-08-17 Released: 2018-08-29
Deposition Author(s): Hong, Z., Liping, Z., Cuiyun, L., Wei, Z.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.245
R-Value Work: 0.178
R-Value Observed: 0.181

wwPDB Validation 3D Report Full Report

Literature

Structural determinants for the inhibition of AKR1B10 by steroids

Hong, Z., Cuiyun, L.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Aldo-keto reductase family 1 member B10	A	316	Homo sapiens	Mutation(s): 0 Gene Names: AKR1B10, AKR1B11 EC: 1.1.1 (PDB Primary Data), 1.1.1.300 (UniProt), 1.1.1.54 (UniProt)
Find proteins for O60218 (Homo sapiens) Explore O60218 Go to UniProtKB: O60218
NIH Common Fund Data Resources
PHAROS: O60218 GTEx: ENSG00000198074
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NAP Query on NAP Download Ideal Coordinates CCD File SDF format, chain B [A] MOL2 format, chain B [A]	A	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C₂₁ H₂₈ N₇ O₁₇ P₃ XJLXINKUBYWONI-NNYOXOHSSA-N		Ligand Interaction
8QL Query on 8QL Download Ideal Coordinates CCD File SDF format, chain C [A] MOL2 format, chain C [A]	A	(3S,6S,8S,9S,10R,13S,14R)-10,13-dimethyl-2,3,6,7,8,9,11,12,14,15,16,17-dodecahydro-1H-cyclopenta[a]phenanthrene-3,6-diol C₁₉ H₃₀ O₂ ILCBKPIQQXGQQW-FHIGQFGOSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.245
R-Value Work: 0.178
R-Value Observed: 0.181
Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.864	α = 90
b = 89.864	β = 90
c = 78.309	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
SCALA	data scaling
CrysalisPro	data collection
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2017-08-17
Released Date: 2018-08-29

Deposition Author(s):

Revision History

Version 1.0: 2018-08-29
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.