5Y6O

Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX

• PDB DOI: https://doi.org/10.2210/pdb5Y6O/pdb

• Classification: GENE REGULATION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-08-13 Released: 2017-10-25 
• Deposition Author(s): Huang, H., Patel, D.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 0.297 
• R-Value Work: 0.224 
• R-Value Observed: 0.227 

Starting Model: experimental

Literature

Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX

Huang, H., Patel, D.J.

(2017) Nat Commun 

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 3 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 123.18 kDa 
• Atom Count: 7,467 
• Modelled Residue Count: 947 
• Deposited Residue Count: 1,071 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Death domain-associated protein 6,Transcriptional regulator ATRX	A, B, C, D, E, F, G, H, I	119	Homo sapiens	Mutation(s): 0  Gene Names: DAXX, BING2, DAP6, ATRX, RAD54L, XH2 EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for P46100 (Homo sapiens) Explore P46100  Go to UniProtKB:  P46100
PHAROS:  P46100 GTEx:  ENSG00000085224
Find proteins for Q9UER7 (Homo sapiens) Explore Q9UER7  Go to UniProtKB:  Q9UER7
PHAROS:  Q9UER7 GTEx:  ENSG00000204209
UniProt Groups	P46100Q9UER7

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 0.297 
• R-Value Work: 0.224 
• R-Value Observed: 0.227 
• Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.666	α = 90
b = 78.666	β = 90
c = 503.215	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data processing
pointless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-10-25 
Deposition Author(s): Huang, H., Patel, D.J.

Revision History  

• Version 1.0: 2017-10-25
  Type: Initial release
  
• Version 1.1: 2023-11-22
  Changes: Data collection, Database references, Refinement description