5Y22 | pdb_00005y22

NMR-Based Model of the 22 Amino Acid Peptide in Polysialyltransferase Domain (PSTD) of the Polysialyltransferase ST8Sia IV

PDB DOI: https://doi.org/10.2210/pdb5Y22/pdb
BMRB: 36109

Classification: SUGAR BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2017-07-23 Released: 2017-11-29
Deposition Author(s): Lu, B., Liao, S.M., Huang, J.M., Lu, Z.L., Chen, D., Liu, X.H., Zhou, G.P., Huang, R.B.
Funding Organization(s): National Science Foundation of China, National Science Foundation of Guangxi, Key Research and Development Program of Guangxi

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 5Y22

This is version 1.2 of the entry. See complete history.

Literature

NMR-Based Model of the 22 Amino Acid Peptide in Polysialyltransferase Domain (PSTD) of the Polysialyltransferase ST8Sia IV

Lu, B., Liao, S.M., Chen, D., Liu, X.H., Zhou, G.P., Huang, R.B.

To be published.

Macromolecule Content

Total Structure Weight: 2.62 kDa
Atom Count: 186
Modeled Residue Count: 22
Deposited Residue Count: 22
Unique protein chains: 1

Macromolecules

Find similar proteins by: Sequence | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
22AA-PSTD peptide	A	22	Homo sapiens	Mutation(s): 0 EC: 2.4.99 (PDB Primary Data), 2.4.3 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q92187 (Homo sapiens) Explore Q92187 Go to UniProtKB: Q92187
PHAROS: Q92187 GTEx: ENSG00000113532
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92187
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2017-11-29

Deposition Author(s):

Funding Organization	Location	Grant Number
National Science Foundation of China	China	31570061
National Science Foundation of China	China	31560251
National Science Foundation of Guangxi	China	2015GXNSFAA139053
Key Research and Development Program of Guangxi	China	AB16380024

Revision History (Full details and data files)

Version 1.0: 2017-11-29
Type: Initial release
Version 1.1: 2023-06-14
Changes: Database references, Other
Version 1.2: 2024-05-15
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.