Macromolecule Content

Total Structure Weight: 13.68 kDa
Atom Count: 866
Residue Count: 102
Unique protein chains: 2

5Y18

Crystal structure of DAXX helical bundle domain in complex with ATRX

DOI: 10.2210/pdb5Y18/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-07-19 Released: 2018-05-30
Deposition Author(s): Chen, Y., Wang, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.219
R-Value Work: 0.186
R-Value Observed: 0.188

wwPDB Validation3D Report Full Report

Literature

Structural basis for DAXX interaction with ATRX

Wang, X., Zhao, Y., Zhang, J., Chen, Y.

(2017) Protein Cell 8: 767-771

PubMed: 28875424 Search on PubMedSearch on PubMed Central
DOI: 10.1007/s13238-017-0462-y
Primary Citation of Related Structures:
5Y18

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Death domain-associated protein 6	A	95	Homo sapiens	Mutation(s): 0 Gene Names: DAXX, BING2, DAP6
Find proteins for Q9UER7 (Homo sapiens) Explore Q9UER7 Go to UniProtKB: Q9UER7
NIH Common Fund Data Resources
PHAROS Q9UER7 GTEx ENSG00000204209
Protein Feature View Expand
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator ATRX	B	23	Homo sapiens	Mutation(s): 0 Gene Names: ATRX, RAD54L, XH2 EC: 3.6.4.12
Find proteins for P46100 (Homo sapiens) Explore P46100 Go to UniProtKB: P46100
NIH Common Fund Data Resources
PHAROS P46100 GTEx ENSG00000085224
Protein Feature View Expand
( Mouse scroll to zoom / Hold left click to move ) Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.219
R-Value Work: 0.186
R-Value Observed: 0.188
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.485	α = 90
b = 107.904	β = 90
c = 30.887	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data collection
HKL-3000	data scaling
SHARP	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2017-07-19
Released Date: 2018-05-30

Deposition Author(s):

Revision History

Version 1.0: 2018-05-30
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.