Macromolecule Content

Total Structure Weight: 13.68 kDa
Atom Count: 866
Modelled Residue Count: 102
Deposited Residue Count: 118
Unique protein chains: 2

5Y18

Crystal structure of DAXX helical bundle domain in complex with ATRX

PDB DOI: https://doi.org/10.2210/pdb5Y18/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-07-19 Released: 2018-05-30
Deposition Author(s): Chen, Y., Wang, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.219
R-Value Work: 0.186
R-Value Observed: 0.188

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural basis for DAXX interaction with ATRX

Wang, X., Zhao, Y., Zhang, J., Chen, Y.

(2017) Protein Cell 8: 767-771

PubMed: 28875424 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1007/s13238-017-0462-y
Primary Citation of Related Structures:
5Y18

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Death domain-associated protein 6	A	95	Homo sapiens	Mutation(s): 0 Gene Names: DAXX, BING2, DAP6
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UER7 (Homo sapiens) Explore Q9UER7 Go to UniProtKB: Q9UER7
PHAROS: Q9UER7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UER7
Protein Feature View Expand
Reference Sequence

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional regulator ATRX	B	23	Homo sapiens	Mutation(s): 0 Gene Names: ATRX, RAD54L, XH2 EC: 3.6.4.12
UniProt & NIH Common Fund Data Resources
Find proteins for P46100 (Homo sapiens) Explore P46100 Go to UniProtKB: P46100
PHAROS: P46100
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P46100
Protein Feature View Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.219
R-Value Work: 0.186
R-Value Observed: 0.188
Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.485	α = 90
b = 107.904	β = 90
c = 30.887	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data collection
HKL-3000	data scaling
SHARP	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-05-30

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-05-30
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.