5Y0A

Cryo-EM structure of zika virus complexed with Fab of ZKA190 at pH 8.0 and 37 celsius degree


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

A Human Bi-specific Antibody against Zika Virus with High Therapeutic Potential.

Wang, J.Bardelli, M.Espinosa, D.A.Pedotti, M.Ng, T.S.Bianchi, S.Simonelli, L.Lim, E.X.Y.Foglierini, M.Zatta, F.Jaconi, S.Beltramello, M.Cameroni, E.Fibriansah, G.Shi, J.Barca, T.Pagani, I.Rubio, A.Broccoli, V.Vicenzi, E.Graham, V.Pullan, S.Dowall, S.Hewson, R.Jurt, S.Zerbe, O.Stettler, K.Lanzavecchia, A.Sallusto, F.Cavalli, A.Harris, E.Lok, S.M.Varani, L.Corti, D.

(2017) Cell 171: 229-241.e15

  • DOI: 10.1016/j.cell.2017.09.002
  • Primary Citation of Related Structures:  
    5OMZ, 5Y0A

  • PubMed Abstract: 
  • Zika virus (ZIKV), a mosquito-borne flavivirus, causes devastating congenital birth defects. We isolated a human monoclonal antibody (mAb), ZKA190, that potently cross-neutralizes multi-lineage ZIKV strains. ZKA190 is highly effective in vivo in preventing morbidity and mortality of ZIKV-infected mice ...

    Zika virus (ZIKV), a mosquito-borne flavivirus, causes devastating congenital birth defects. We isolated a human monoclonal antibody (mAb), ZKA190, that potently cross-neutralizes multi-lineage ZIKV strains. ZKA190 is highly effective in vivo in preventing morbidity and mortality of ZIKV-infected mice. NMR and cryo-electron microscopy show its binding to an exposed epitope on DIII of the E protein. ZKA190 Fab binds all 180 E protein copies, altering the virus quaternary arrangement and surface curvature. However, ZIKV escape mutants emerged in vitro and in vivo in the presence of ZKA190, as well as of other neutralizing mAbs. To counter this problem, we developed a bispecific antibody (FIT-1) comprising ZKA190 and a second mAb specific for DII of E protein. In addition to retaining high in vitro and in vivo potencies, FIT-1 robustly prevented viral escape, warranting its development as a ZIKV immunotherapy.


    Related Citations: 
    • Cryo-EM structure of zika virus complexed with a human monoclonal antibody
      Wang, J.Q., Lok, S.M.
      () To be published --: --

    Organizational Affiliation

    Humabs BioMed SA a subsidiary of Vir Biotechnology, Inc., Via Mirasole 1, 6500 Bellinzona, Switzerland. Electronic address: davide.corti@humabs.ch.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
protein EA, C [auth B], B [auth C]403Zika virusMutation(s): 0 
EC: 3.4.21.91 (UniProt), 3.6.1.15 (UniProt), 3.6.4.13 (UniProt), 2.1.1.56 (UniProt), 2.1.1.57 (UniProt), 2.7.7.48 (UniProt)
UniProt
Find proteins for A0A024B7W1 (Zika virus (isolate ZIKV/Human/French Polynesia/10087PF/2013))
Explore A0A024B7W1 
Go to UniProtKB:  A0A024B7W1
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
variable region of Fab ZKA190 heavy chainH [auth D], F, D [auth H]129Homo sapiensMutation(s): 0 
Protein Feature View
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
variable region of Fab ZKA190 light chainI [auth E], G, E [auth L]108Homo sapiensMutation(s): 0 
Protein Feature View
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 22.0 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report




Entry History 

Deposition Data

  • Deposited Date: 2017-07-15 
  • Released Date: 2017-10-04 
  • Deposition Author(s): Wang, J.Q., Lok, S.M.

Revision History  (Full details and data files)

  • Version 1.0: 2017-10-04
    Type: Initial release