5XZ1

Crystal structure of the Homo Sapiens cytoplasmic ribosomal decoding site in complex with G418


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.008 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.193 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural studies of aminoglycoside antibiotics G418 and its derivatives with readthrough activities

Kanazawa, H.Tsurumi, N.Baasov, T.Kondo, J.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
RNA (5'-R(*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')A,B,C,D22synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GET
Query on GET

Download SDF File 
Download CCD File 
A, B, C
GENETICIN
G418
C20 H40 N4 O10
BRZYSWJRSDMWLG-DJWUNRQOSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.008 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.193 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 47.399α = 90.00
b = 32.528β = 95.58
c = 96.484γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
XSCALEdata scaling
PDB_EXTRACTdata extraction
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2018-07-18
    Type: Initial release