5XYG

Structure of 6-aminohexanoate-oligomer hydrolase from Arthrobacter sp. KI72.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Structural basis of the correct subunit assembly, aggregation, and intracellular degradation of nylon hydrolase

Negoro, S.Shibata, N.Lee, Y.H.Takehara, I.Kinugasa, R.Nagai, K.Tanaka, Y.Kato, D.I.Takeo, M.Goto, Y.Higuchi, Y.

(2018) Sci Rep 8: 9725-9725


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Endotype 6-aminohexanoat-oligomer hydrolase
A, B
355N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SO4
Query on SO4

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A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

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Download CCD File 
A, B
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

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Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.192 
  • R-Value Work: 0.161 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 70.844α = 90.00
b = 144.903β = 90.00
c = 129.045γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
CNSphasing
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for Promotion of ScienceJapan26289317

Revision History 

  • Version 1.0: 2018-11-21
    Type: Initial release