5XXA | pdb_00005xxa

beta-1,4-mannanase-SeMet-RmMan134A

PDB DOI: https://doi.org/10.2210/pdb5XXA/pdb

Classification: HYDROLASE
Organism(s): Rhizopus microsporus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2017-07-03 Released: 2018-07-25
Deposition Author(s): Jiang, Z.Q., You, X., Yang, D., Huang, P.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free:
0.193 (Depositor), 0.190 (DCC)
R-Value Work:
0.186 (Depositor), 0.180 (DCC)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structure of endo-1,4-beta-mannanase at 1.76 Angstroms resolution.

Jiang, Z.Q., You, X., Yang, D., Huang, P.

To be published.

Macromolecule Content

Total Structure Weight: 36.76 kDa
Atom Count: 2,883
Modeled Residue Count: 308
Deposited Residue Count: 324
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
endo-1,4-beta-mannanase	A, B	162	Rhizopus microsporus	Mutation(s): 0 Gene Names: BCV71DRAFT_26579, RMCBS344292_04886
UniProt
Find proteins for A0A0A1NDE2 (Rhizopus microsporus) Explore A0A0A1NDE2 Go to UniProtKB: A0A0A1NDE2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0A1NDE2
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.76 Å
R-Value Free: 0.193 (Depositor), 0.190 (DCC)
R-Value Work: 0.186 (Depositor), 0.180 (DCC)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.614	α = 90
b = 59.083	β = 90
c = 124.231	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-07-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-07-25
Type: Initial release
Version 1.1: 2024-10-09
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.