Download MendeleyCrystal Structure of SPAP, an alkaline phosphatase from Sphingomonas in complex with
Bihani, S.C.To be published.
5XWK
Crystal Structure of SPAP, an alkaline phosphatase from Sphingomonas in complex with inorganic phosphate
- PDB DOI: https://doi.org/10.2210/pdb5XWK/pdb
- Classification: HYDROLASE
- Organism(s): Sphingomonas sp.
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2017-06-29 Released: 2018-07-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.203
- R-Value Work: 0.167
- R-Value Observed: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alkaline phosphatase PhoK | 567 | Sphingomonas sp. | Mutation(s): 0 Gene Names: phoK EC: 3.1.3.1 |  | |
UniProt | |||||
Find proteins for A1YYW7 (Sphingomonas sp) Explore A1YYW7 Go to UniProtKB: A1YYW7 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A1YYW7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | F [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| GOL Query on GOL | B [auth A], G [auth A], H [auth A], I [auth A], J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CA Query on CA | E [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.203
- R-Value Work: 0.167
- R-Value Observed: 0.169
- Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 86.99 | α = 90 |
| b = 86.99 | β = 90 |
| c = 165.484 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2018-07-18 Deposition Author(s): Bihani, S.C., Hosur, M.V.
Revision History (Full details and data files)
- Version 1.0: 2018-07-18
Type: Initial release - Version 1.1: 2023-11-22
Changes: Data collection, Database references, Derived calculations, Refinement description
