5XUH | pdb_00005xuh

Crystal structure of Escherichia coli holo-[acyl-carrier-protein] synthase (AcpS) D9A mutant in complex with CoA

PDB DOI: https://doi.org/10.2210/pdb5XUH/pdb

Classification: TRANSFERASE
Organism(s): Escherichia coli K-12
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2017-06-23 Released: 2018-06-27
Deposition Author(s): Liao, Y.P., Wang, D.L., Yin, D.P., Zhang, Q.Y., Wang, Y.M., Wang, D.Q., Zhu, H.X., Chen, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.02 Å
R-Value Free:
0.207 (Depositor), 0.211 (DCC)
R-Value Work:
0.157 (Depositor), 0.156 (DCC)
R-Value Observed:
0.159 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

Crystal structures of acyl carrier protein synthases (AcpS) from three Gram-negative bacteria

Liao, Y.P., Wang, D.L., Yin, D.P., Zhang, Q.Y., Wang, Y.M., Wang, D.Q., Zhu, H.X., Chen, S.

To be published.

Macromolecule Content

Total Structure Weight: 43.9 kDa
Atom Count: 3,403
Modeled Residue Count: 368
Deposited Residue Count: 378
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Holo-[acyl-carrier-protein] synthase	A, B, C	126	Escherichia coli K-12	Mutation(s): 1 Gene Names: acpS, dpj, b2563, JW2547 EC: 2.7.8.7
UniProt
Find proteins for P24224 (Escherichia coli (strain K12)) Explore P24224 Go to UniProtKB: P24224
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P24224
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
COA Query on COA Download:Ideal Coordinates CCD File SDF format, chain J [auth C] SDF format, chain H [auth B] MOL2 format, chain J [auth C] MOL2 format, chain H [auth B] mmCIF format, chain J [auth C] mmCIF format, chain H [auth B]	H [auth B], J [auth C]	COENZYME A C₂₁ H₃₆ N₇ O₁₆ P₃ S RGJOEKWQDUBAIZ-IBOSZNHHSA-N		Interactions Focus chain H [auth B] Focus chain J [auth C] Interactions & Density Focus chain H [auth B] Focus chain J [auth C]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain G [auth A] MOL2 format, chain G [auth A] mmCIF format, chain G [auth A]	G [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Interactions & Density Focus chain G [auth A]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain I [auth B] SDF format, chain F [auth A] SDF format, chain E [auth A] SDF format, chain D [auth A] MOL2 format, chain K [auth C] MOL2 format, chain I [auth B] MOL2 format, chain F [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] mmCIF format, chain K [auth C] mmCIF format, chain I [auth B] mmCIF format, chain F [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A]	D [auth A], E [auth A], F [auth A], I [auth B], K [auth C]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain I [auth B] Focus chain K [auth C] Interactions & Density Focus chain D [auth A] Focus chain E [auth A] Focus chain F [auth A] Focus chain I [auth B] Focus chain K [auth C]