5XSS

XylFII molecule


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.1 of the entry. See complete history



Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Periplasmic binding protein/LacI transcriptional regulatorA [auth X],
B [auth A],
C [auth B],
D [auth C]
316Clostridium beijerinckii NCIMB 8052Mutation(s): 0 
Gene Names: Cbei_2377
UniProt
Find proteins for A6LW07 (Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052))
Explore A6LW07 
Go to UniProtKB:  A6LW07
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA6LW07
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.180 
  • R-Value Observed: 0.182 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 67.541α = 89.89
b = 68.059β = 65.15
c = 76.677γ = 87.33
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-3000data reduction
HKL-3000data processing
PHENIXphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
the National Natural Science Foundation of ChinaChina31670755
the National Natural Science Foundation of ChinaChina31322016
the National Natural Science Foundation of ChinaChina31630003
the National Natural Science Foundation of ChinaChina31421061
the Chinese Academy of SciencesChinaQYZDB-SSW-SMC006

Revision History  (Full details and data files)

  • Version 1.0: 2017-08-02
    Type: Initial release
  • Version 1.1: 2017-08-09
    Changes: Database references
  • Version 1.2: 2017-11-15
    Changes: Source and taxonomy
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary
  • Version 2.1: 2024-03-27
    Changes: Data collection, Database references, Structure summary