5XP8

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.214 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of T. thermophilus Argonaute protein complexed with a bulge 4A5 on the guide strand

Sheng, G.Gogakos, T.Wang, J.Zhao, H.Serganov, A.Juranek, S.Tuschl, T.Patel, J.D.Wang, Y.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
TtAgo
A
685Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Find proteins for Q746M7 (Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
Go to UniProtKB:  Q746M7
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (5'-D(P*TP*GP*AP*GP*AP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*T)-3')E22Thermus thermophilus
Entity ID: 3
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*AP*AP*CP*C*AP*TP*AP*CP*TP*AP*CP*CP*TP*CP*G)-3')F19Thermus thermophilus
Entity ID: 4
MoleculeChainsLengthOrganism
DNA (5'-D(*AP*GP*T)-3')C3Thermus thermophilus
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.214 
  • Space Group: P 41 3 2
Unit Cell:
Length (Å)Angle (°)
a = 202.140α = 90.00
b = 202.140β = 90.00
c = 202.140γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data processing
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationCountryGrant Number
Natural Science Foundation of ChinaChina31571335
Natural Science Foundation of ChinaChina31630015
Natural Science Foundation of ChinaChina91440201
the Chinese Ministry of Science and TechnologyChina2014CB910102

Revision History 

  • Version 1.0: 2018-04-18
    Type: Initial release