5XMF

Crystal structure of feline MHC class I for 2,1 angstrom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.213 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Major Histocompatibility Complex Class I (FLA-E*01801) Molecular Structure in Domestic Cats Demonstrates Species-Specific Characteristics in Presenting Viral Antigen Peptides

Liang, R.Sun, Y.Liu, Y.Wang, J.Wu, Y.Li, Z.Ma, L.Zhang, N.Zhang, L.Wei, X.Qu, Z.Zhang, N.Xia, C.

(2018) J. Virol. 92: --


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
MHC class I antigen alpha chain
A
275Felis catusMutation(s): 0 
Gene Names: FLA-I
Find proteins for C6ZK72 (Felis catus)
Go to UniProtKB:  C6ZK72
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Beta-2-microglobulin
B
99Felis catusMutation(s): 0 
Gene Names: B2M
Find proteins for Q5MGS7 (Felis catus)
Go to Gene View: B2M
Go to UniProtKB:  Q5MGS7
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Gag polyprotein
C
9Feline immunodeficiency virusMutation(s): 0 
Gene Names: gag
Find proteins for P16087 (Feline immunodeficiency virus)
Go to UniProtKB:  P16087
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.213 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 47.421α = 90.00
b = 83.379β = 90.00
c = 121.636γ = 90.00
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
PHASERphasing
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
the 973 Project of the China Ministry of Science and TechnologyChinaNO.2013CB835302
state key program of the National Natural Science Foundation of ChinaChinaNO. 31201887
the 863 Project of the China Ministry of Science and TechnologyChinaNO. 2013AA102503

Revision History 

  • Version 1.0: 2017-12-13
    Type: Initial release
  • Version 1.1: 2019-01-16
    Type: Data collection, Database references